Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ATAC-seq
RNA-seq
1
scRNA-seq
Available data
2
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
1
Homo sapiens
Biosample type
3
primary cell
Biosample term
108
monocyte
54
common myeloid progenitor, CD34-positive
48
CD8-positive, alpha-beta T cell
38
B cell
36
endothelial cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
27
fibroblast
22
CD8-positive, alpha-beta memory T cell
22
epithelial cell of proximal tubule
22
hepatocyte
22
pericyte cell
21
macrophage
20
T cell
20
mononuclear cell
20
natural killer cell
19
endothelial cell of umbilical vein
19
foreskin keratinocyte
19
glomerular endothelial cell
19
smooth muscle cell
18
pancreatic beta cell
18
pancreatic ductal cell
17
keratinocyte
17
regulatory T cell
17
trophoblast cell
16
astrocyte
16
fibroblast of lung
16
pancreatic acinar cell
16
pancreatic alpha cell
16
pancreatic delta cell
15
CD4-positive, alpha-beta T cell
15
foreskin fibroblast
14
T-helper 1 cell
14
T-helper 17 cell
14
skeletal muscle myoblast
13
T-helper 2 cell
13
mammary gland epithelial cell
13
neurosphere
13
osteoblast
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
12
fibroblast of cardiac tissue
12
fibroblast of dermis
12
mammary epithelial cell
12
neutrophil
12
skeletal muscle satellite cell
11
bronchial epithelial cell
11
erythroblast
10
dermis blood vessel endothelial cell
10
naive thymus-derived CD4-positive, alpha-beta T cell
9
epithelial cell of prostate
9
glomerular visceral epithelial cell
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
9
skeletal muscle fiber
8
fibroblast of breast
8
glutamatergic neuron
8
hepatic stellate cell
8
kidney tubule cell
8
myoepithelial cell of mammary gland
8
pancreatic stellate cell
8
skin fibroblast
7
cardiac muscle cell
7
choroid plexus epithelial cell
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
7
type II pneumocyte
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis lymphatic vessel endothelial cell
6
enterocyte
6
epithelial cell of esophagus
6
foreskin melanocyte
6
kidney epithelial cell
6
kidney glomerular epithelial cell
6
mast cell
6
memory B cell
6
mesangial cell
6
mesenchymal stem cell
6
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
6
peripheral blood mononuclear cell
6
plasma cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
6
type I muscle cell
6
type II muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
basal cell
5
brain microvascular endothelial cell
5
fibroblast of the aortic adventitia
5
gabaergic neuron
5
inflammatory macrophage
5
inhibitory neuron
5
kidney capillary endothelial cell
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
pancreatic endothelial cell
4
adipocyte
4
adult endothelial progenitor cell
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
blood vessel smooth muscle cell
4
cardiac fibroblast
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of gingiva
4
fibroblast of peridontal ligament
4
fibroblast of the conjunctiva
4
gamma-delta T cell
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
megakaryocyte
4
mesothelial cell
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
preadipocyte
4
smooth muscle cell of the esophagus
4
stromal cell of bone marrow
4
tracheal epithelial cell
Date released
2
May, 2020
1
August, 2018
Software used
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
RNA-seq
month_released!
June, 2020
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR924GRH
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal memory T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462WTF
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated memory T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR570PWL
released
Annotation file set
: mesenchymal cell TPM gene expreassion matrix and statistic summary from scRNA-seq publications for non-diabetic adults
Lab:
AMP-T2D consortium
Project:
AMP