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Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
1
hQTL
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
RNA-seq
3
ChIP-seq
Available data
bed bed3+
18
bigWig
2
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
21
heart
19
stomach
18
A549
18
brain
16
kidney
16
lung
16
muscle of arm
15
muscle of leg
15
small intestine
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
11
liver
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
B cell
8
heart left ventricle
7
CD8-positive, alpha-beta memory T cell
7
mature neutrophil
7
spinal cord
6
K562
6
adipose tissue
6
embryonic stem cell
6
mononuclear cell
6
spleen
5
CD14-positive, CD16-negative classical monocyte
5
MCF-7
5
endothelial cell of umbilical vein
5
heart right ventricle
5
neural progenitor cell
5
sigmoid colon
5
trophoblast cell
4
CD14-positive monocyte
4
T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
mesenchymal stem cell
4
muscle of trunk
4
ovary
4
psoas muscle
4
temporal lobe
4
thyroid gland
4
tibial nerve
4
transverse colon
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
adipocyte
3
ascending aorta
3
chorion membrane
3
coronary artery
3
endometrium adenocarcinoma
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
layer of hippocampus
3
left renal cortex interstitium
3
mammary gland epithelial cell
3
naive T cell
3
natural killer cell
3
neurosphere
3
neutrophil
3
regulatory T cell
3
retina
3
right cardiac atrium
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
tibial artery
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
KARPAS-422 cell
2
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipose-derived stem cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
hepatic stellate cell
2
hepatocyte
2
keratinocyte
2
kidney capillary endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left renal pelvis
2
limb
2
lower leg skin
2
medulla oblongata
2
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
omental fat pad
2
pancreas
2
pancreatic acinar cell
2
pancreatic ductal cell
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
right atrium auricular region
2
right renal pelvis
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell
2
stomach smooth muscle
2
substantia nigra
2
superior temporal gyrus
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Ammon's horn
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD8-positive, alpha-beta T cell
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G401
1
GM03348
Organ
2
heart
Life stage
3
adult
Date released
2
September, 2022
1
May, 2021
Software used
2
chromhmm
1
limix
1
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
annotation_type_category!
RNA-seq
files.file_type!
bed bed3+
tsv
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR833ICS
released
Annotation file set
: Chromatin states for BSS01507 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR354CGU
released
Annotation file set
: Chromatin states for BSS01506 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930EID
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP