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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
6
ChIP-seq
5
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
in vitro differentiated cells
Biosample term
111
monocyte
87
heart
84
stomach
74
kidney
70
brain
67
muscle of arm
65
lung
64
HeLa-S3
62
A549
61
small intestine
59
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
47
CD8-positive, alpha-beta T cell
46
H1-hESC
46
thymus
45
right lung
44
liver
42
hematopoietic multipotent progenitor cell
42
neural progenitor cell
41
B cell
41
K562
41
right kidney
40
renal cortex interstitium
40
renal pelvis
38
retina
36
left kidney
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
endothelial cell
31
heart left ventricle
31
spleen
30
fibroblast
27
adipose tissue
26
MCF-7
25
adipocyte
24
hepatocyte
24
islet of Langerhans
24
smooth muscle cell
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
body of pancreas
22
foreskin keratinocyte
22
pericyte cell
22
sigmoid colon
22
tibial nerve
21
T cell
21
keratinocyte
21
macrophage
20
breast cancer cell
20
mononuclear cell
20
natural killer cell
20
pigmented layer of retina
19
caudate nucleus
19
foreskin fibroblast
19
pancreas
19
psoas muscle
19
regulatory T cell
18
HFFc6
18
coronary artery
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
17
cardiac muscle cell
17
heart right ventricle
17
mesenchymal stem cell
17
muscle of trunk
17
ovary
17
thyroid gland
17
tibial artery
17
transverse colon
16
GM12878
16
chorionic villus
16
fibroblast of cardiac tissue
16
fibroblast of lung
16
retinal pigment epithelial cell
16
right atrium auricular region
16
upper lobe of left lung
15
HepG2
15
embryonic stem cell
15
layer of hippocampus
15
mammary gland epithelial cell
15
pancreatic ductal cell
15
skeletal muscle tissue
15
substantia nigra
15
testis
14
H9
14
T-helper 1 cell
14
ascending aorta
14
astrocyte
14
endocrine pancreas
14
omental fat pad
14
osteoblast
14
skeletal muscle myoblast
13
CD4-positive, alpha-beta T cell
13
Peyer's patch
13
T-helper 17 cell
13
T-helper 2 cell
13
bronchial epithelial cell
13
neurosphere
13
neutrophil
13
subcutaneous adipose tissue
12
EndoC_BH1
12
cerebellum
12
fibroblast of dermis
12
mammary epithelial cell
12
neuroblastoma cell
12
pancreatic beta cell
12
prostate gland
12
skeletal muscle satellite cell
11
aorta
11
breast epithelium
11
endothelial cell of hepatic sinusoid
11
epithelial cell of prostate
11
excitatory neuron
11
frontal cortex
11
left renal cortex interstitium
11
left renal pelvis
11
pancreatic acinar cell
11
putamen
11
right renal pelvis
11
temporal lobe
10
22Rv1
10
Ammon's horn
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
lymphocyte
10
neuronal stem cell
10
pancreatic alpha cell
10
skin fibroblast
10
thoracic aorta
9
SK-N-DZ
9
SK-N-SH
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
erythroblast
9
kidney tubule cell
9
liposarcoma
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
pancreatic delta cell
9
parathyroid adenoma
9
right renal cortex interstitium
9
tongue
9
trophoblast
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
cingulate gyrus
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
esophagus muscularis mucosa
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
skeletal muscle fiber
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
hepatic stellate cell
7
mature neutrophil
7
right lobe of liver
7
stomach smooth muscle
6
Brodmann (1909) area 46
6
Chondroid Chordoma
Life stage
4
embryonic
Date released
3
February, 2021
3
September, 2022
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type_category!
pCHi-C
biosample_term_name!
GM12865
month_released!
January, 2022
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP