Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
pCHi-C
Available data
6
bed bed3+
1
bed bed9
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
in vitro differentiated cells
Biosample term
129
monocyte
72
heart
66
kidney
65
stomach
60
brain
50
lung
50
muscle of arm
48
placenta
48
small intestine
47
adrenal gland
45
neural progenitor cell
44
endothelial cell
44
islet of Langerhans
44
muscle of leg
43
CD8-positive, alpha-beta T cell
42
large intestine
42
liver
40
B cell
40
common myeloid progenitor, CD34-positive
39
left lung
39
muscle of back
37
hepatocyte
37
retina
34
fibroblast
34
hematopoietic multipotent progenitor cell
34
right lung
32
right kidney
30
adipose tissue
30
macrophage
30
renal pelvis
29
renal cortex interstitium
27
CD14-positive monocyte
27
CD4-positive, alpha-beta memory T cell
27
adipocyte
27
heart left ventricle
27
left kidney
26
regulatory T cell
26
smooth muscle cell
24
pancreatic ductal cell
24
pericyte cell
24
spinal cord
24
spleen
23
T cell
23
natural killer cell
22
epithelial cell of proximal tubule
22
tibial nerve
21
CD8-positive, alpha-beta memory T cell
20
T-helper 1 cell
20
body of pancreas
20
caudate nucleus
20
coronary artery
20
glomerular endothelial cell
20
pigmented layer of retina
19
T-helper 17 cell
19
mononuclear cell
19
subcutaneous adipose tissue
19
trophoblast cell
18
pancreatic beta cell
18
right atrium auricular region
17
pancreas
17
pancreatic alpha cell
17
tibial artery
16
astrocyte
16
endothelial cell of hepatic sinusoid
16
endothelial cell of umbilical vein
16
frontal cortex
16
keratinocyte
16
osteoblast
16
psoas muscle
16
sigmoid colon
15
T-helper 2 cell
15
cerebellum
15
foreskin keratinocyte
15
heart right ventricle
15
mammary gland epithelial cell
15
mesenchymal stem cell
15
ovary
15
pancreatic acinar cell
15
pancreatic delta cell
15
retinal pigment epithelial cell
15
substantia nigra
15
thyroid gland
14
ascending aorta
14
embryonic stem cell
14
excitatory neuron
14
skeletal muscle myoblast
13
fibroblast of lung
13
gastrocnemius medialis
13
layer of hippocampus
13
omental fat pad
13
testis
13
transverse colon
12
chorionic villus
12
endocrine pancreas
12
fibroblast of cardiac tissue
12
muscle of trunk
12
neutrophil
12
putamen
12
skeletal muscle satellite cell
12
skeletal muscle tissue
11
cardiomyocytes
11
fibroblast of dermis
11
foreskin fibroblast
11
left cardiac atrium
11
prostate gland
10
Ammon's horn
10
Peyer's patch
10
aorta
10
bronchial epithelial cell
10
chorion membrane
10
erythroblast
10
glomerular visceral epithelial cell
10
hepatic stellate cell
10
pancreatic stellate cell
10
upper lobe of left lung
9
cardiac muscle cell
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
kidney tubule cell
9
mammary epithelial cell
9
neuronal stem cell
9
skin fibroblast
9
temporal lobe
8
T-cell acute lymphoblastic leukemia
8
angular gyrus
8
breast epithelium
8
colonic mucosa
8
dendritic cell
8
esophagus muscularis mucosa
8
mast cell
8
naive T cell
8
progenitor cell of endocrine pancreas
8
skeletal muscle fiber
8
thoracic aorta
8
trophoblast
7
CD4-positive helper T cell
7
amygdala
7
cardiomyocytes (cardiac muscle cell)
7
cingulate gyrus
7
duodenal mucosa
7
endothelial cell of lymphatic vessel
7
epithelial cell of prostate
7
esophagus
7
esophagus squamous epithelium
7
eye
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
globus pallidus
7
glutamatergic neuron
7
hypothalamus
7
kidney glomerular epithelial cell
7
left renal cortex interstitium
7
left renal pelvis
7
limb
7
mature neutrophil
7
memory B cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
anterior cingulate cortex
6
cardiac precursors (cardiac muscle cell)
6
cerebellum (Hemisphere)
6
choroid plexus epithelial cell
6
colon epithelial cell
6
cortical cell of adrenal gland
6
dermis blood vessel endothelial cell
6
dermis lymphatic vessel endothelial cell
6
endodermal cell
6
enterocyte
6
fibroblast of breast
6
fibroblast of mammary gland
6
gamma-delta T cell
6
kidney interstitial cell
6
kidney loop of Henle thin ascending limb epithelial cell
6
midbrain
6
mucosa of rectum
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neurosphere
6
nucleus accumbens
6
occipital lobe
6
plasma cell
6
right lobe of liver
6
right renal pelvis
6
superior temporal gyrus
6
tongue
6
type I muscle cell
5
cardiac fibroblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
Life stage
3
embryonic
Date released
3
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
chromhmm
encode-ccres
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type_category!
pCHi-C
biosample_type!
cell line
organ_slims!
thymus
software_used.software.name!
encode-ccres
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP