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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
1
binding sites
1
chromatin state
1
eQTL
1
histone modifications
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
Available data
7
bed bed3+
1
bigBed bed9
File set status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
85
heart
73
brain
72
kidney
67
muscle of arm
64
stomach
62
lung
60
placenta
58
muscle of leg
56
large intestine
55
small intestine
54
H1-hESC
54
muscle of back
53
HeLa-S3
52
left lung
51
neural progenitor cell
48
thymus
45
right lung
42
right kidney
40
renal cortex interstitium
40
renal pelvis
37
adrenal gland
36
left kidney
35
spinal cord
30
CD8-positive, alpha-beta T cell
29
monocyte
27
islet of Langerhans
23
CD4-positive, alpha-beta memory T cell
23
EndoC_BH1
23
liver
23
trophoblast cell
22
K562
22
foreskin keratinocyte
21
adipocyte
20
breast cancer cell
20
pancreatic ductal cell
19
CD14-positive monocyte
19
HFFc6
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart left ventricle
18
B cell
18
embryonic stem cell
18
macrophage
17
T-helper 17 cell
17
cardiac muscle cell
17
keratinocyte
17
muscle of trunk
17
retina
16
H9
16
HepG2
16
chorionic villus
16
hepatocyte
16
induced pluripotent stem cell
16
regulatory T cell
15
endothelial cell
15
osteoblast
15
retinal pigment epithelial cell
14
heart right ventricle
14
mesenchymal stem cell
13
bronchial epithelial cell
13
neurosphere
13
spleen
12
common myeloid progenitor, CD34-positive
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
neuroblastoma cell
12
smooth muscle cell
11
GM12878
11
epithelial cell of prostate
11
fibroblast of lung
11
left cardiac atrium
11
left renal pelvis
11
pancreatic beta cell
11
right renal pelvis
11
skeletal muscle myoblast
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
gastric cancer cell
10
lymphocyte
10
neuronal stem cell
10
neutrophil
10
pancreatic acinar cell
10
pancreatic delta cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
trophoblast
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
T cell
9
T-helper 1 cell
9
T-helper 2 cell
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
fibroblast
9
fibroblast of cardiac tissue
9
liposarcoma
9
mammary epithelial cell
9
tongue
8
B-lymphoblastoid cell line
8
GM06990
8
GM12864
8
GM12865
8
NAMALWA cell
8
endodermal cell
8
fibroblast cell line
8
fibroblast of dermis
8
limb
8
mammary gland epithelial cell
8
mesendoderm
8
ovary
8
pancreatic stellate cell
8
pituitary stalk
8
testis
7
AG04449 cell
7
AG04450 cell
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CD4-positive helper T cell
7
CD8-positive, alpha-beta memory T cell
7
CMK
7
Jurkat
7
MCF-7
7
MG63
7
SK-N-MC
7
WERI-Rb-1
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
eye
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
glomerular endothelial cell
7
hematopoietic multipotent progenitor cell
7
natural killer cell
7
pancreas
7
pancreatic alpha cell
7
skeletal muscle tissue
7
skin fibroblast
6
Chondroid Chordoma
6
Daoy
6
GM08714
6
GM12891
6
GM12892
6
GM18507
6
H7-hESC
6
HUES6
6
HUES8
6
NT2-D1 cell
6
PC-9
6
WI38
6
adipose tissue
6
astrocyte
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular visceral epithelial cell
6
hESC cell
6
iPSC derived cell line
6
mesodermal cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
psoas muscle
5
A549
5
A673
5
CD4-positive, alpha-beta T cell
5
CyT49
5
Ewing sarcoma
5
GM19240
5
HCT-116 cell
5
HK-2 cell
5
HUES64
5
KARPAS-422 cell
5
L1-S8
5
SGBS preadipocytes
5
acute myeloid leukemia
5
coronary artery
5
kidney epithelial cell
5
memory B cell
5
neural cell
5
non-pigmented ciliary epithelial cell
5
osteosarcoma
5
prostate cancer cell line
5
pulmonary artery endothelial cell
5
renal cortical epithelial cell
5
sigmoid colon
5
skeletal muscle cell
5
skin of body
5
smooth muscle cell of the coronary artery
5
type I muscle cell
5
umbilical cord
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
Organ
8
pancreas
Life stage
adult
Date released
2
February, 2021
2
June, 2020
1
August, 2017
1
January, 2022
1
March, 2020
1
May, 2021
Software used
4
macs
1
abc
1
chromhmm
1
nospecificsoft_customcode
1
qTLtools
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
annotation_type_category!
quantitative proteomics
award.rfa!
ENCODE3
relevant_life_stage!
adult
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR692ASX
released
Annotation file set
: pancreas eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR782YGE
released
Annotation file set
: Histone modifications annotation for Pancreas Pancreas from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR546ZVV
released
Annotation file set
: Binding sites annotation for Pancreas Pancreas from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR213AOJ
released
Annotation file set
: enhancer-gene predicton of pancreas-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR701SSG
released
Annotation file set
: Accessible chromatin annotation for Pancreas Pancreas from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR109RRW
released
Annotation file set
: Accessible chromatin annotation for Pancreas Body of pancreas from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR304SKW
released
Annotation file set
: A target gene prediction annotation in Human Pancreas of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR608480
released
Annotation file set
: ChromHMM 18-state model for Pancreas
Lab:
AMP-T2D consortium
Project:
AMP