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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
snATAC-seq
Available data
2
bed bed9
File set status
2
released
Genome assembly (visualization)
23
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
2
in vitro differentiated cells
Biosample term
100
monocyte
54
HeLa-S3
38
H1-hESC
27
neural progenitor cell
25
kidney
23
heart
22
K562
21
brain
20
stomach
19
HFFc6
18
A549
17
hepatocyte
17
lung
17
muscle of arm
16
muscle of leg
16
small intestine
15
adrenal gland
15
placenta
14
endothelial cell of hepatic sinusoid
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
12
coronary artery
12
heart left ventricle
11
right lung
thymus
10
hematopoietic multipotent progenitor cell
10
liver
10
pericyte cell
10
renal cortex interstitium
10
renal pelvis
10
right kidney
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
caudate nucleus
9
left kidney
9
right atrium auricular region
9
tibial artery
8
B cell
8
ascending aorta
8
body of pancreas
8
cerebellum
8
frontal cortex
8
macrophage
8
omental fat pad
8
putamen
8
spinal cord
8
spleen
8
substantia nigra
7
CD8-positive, alpha-beta memory T cell
7
GM12878
7
H9
7
adipose tissue
7
endothelial cell
7
left cardiac atrium
7
lymphocyte
7
smooth muscle cell
7
subcutaneous adipose tissue
6
Ammon's horn
6
HepG2
6
T cell
6
fibroblast
6
heart right ventricle
6
iPSC derived cell line
6
lymphoblastoid cell line
6
mononuclear cell
6
olfactory receptor cell
6
pancreas
5
MCF-7
5
amygdala
5
anterior cingulate cortex
5
hypothalamus
5
islet of Langerhans
5
nucleus accumbens
5
ovary
5
regulatory T cell
5
retina
5
right lobe of liver
5
sigmoid colon
5
thyroid gland
5
transverse colon
5
trophoblast cell
4
C1 segment of cervical spinal cord
4
CD14-positive monocyte
4
CyT49
4
HUES8
4
T-helper 1 cell
4
T-helper 17 cell
4
T-helper 2 cell
4
angular gyrus
4
aorta
4
astrocyte
4
cerebellum (Hemisphere)
4
chorionic villus
4
colon epithelial cell
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
fibroblast of cardiac tissue
4
foreskin keratinocyte
4
gastrocnemius medialis
4
gastrocnemius medialis(Muscle - Skeletal)
4
keratinocyte
4
layer of hippocampus
4
left ventricle myocardium
4
mammary gland epithelial cell
4
muscle of trunk
4
natural killer cell
4
osteoblast
4
pancreatic ductal cell
4
psoas muscle
4
skin of body
4
temporal lobe
4
testis
4
thoracic aorta
3
cardiac fibroblast
3
CD4-positive helper T cell
3
HCT116
3
Peyer's patch
3
blood cell
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of dermis
3
fibroblast of lung
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
left renal pelvis
3
luminal epithelial cell of mammary gland
3
mesenchymal stem cell
3
naive T cell
3
neurosphere
3
neutrophil
3
pancreatic A cell
3
pancreatic acinar cell
3
prostate gland
3
right cardiac atrium
3
right renal pelvis
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
skin fibroblast
3
type B pancreatic cell
3
upper lobe of left lung
3
vagina
2
22Rv1
2
Brodmann (1909) area 46
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
LNCaP clone FGC
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
adipocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
brain microvascular endothelial cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
cortical cell of adrenal gland
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus squamous epithelium
2
eye
2
fat cell
2
fibroblast of breast
2
foreskin fibroblast
2
gabaergic neuron
2
germinal matrix
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
glutamatergic neuron
2
hepatic stellate cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left renal cortex interstitium
2
limb
2
lower leg skin
2
microglial cell
2
middle frontal gyrus
2
mucosa of rectum
2
muscle
Organ
2
connective tissue
Life stage
1
adult
1
unknown
Date released
2
September, 2022
Software used
2
chromhmm
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
snATAC-seq
biosample_term_name!
thymus
month_released!
May, 2020
Showing 2 of 2 results
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Download
FileSet
DSR148SNR
released
Annotation file set
: Chromatin states for BSS00039 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP