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Schema
Citing CMDGA
Clear Filters
Annotation type
1
binding sites
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
snATAC-seq
1
ATAC-seq
Available data
3
bed bed3+
tsv
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
111
monocyte
54
common myeloid progenitor, CD34-positive
42
CD8-positive, alpha-beta T cell
32
B cell
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
22
CD8-positive, alpha-beta memory T cell
22
hepatocyte
20
endothelial cell of umbilical vein
20
mononuclear cell
19
foreskin keratinocyte
18
trophoblast cell
17
regulatory T cell
16
fibroblast of lung
16
foreskin fibroblast
16
skeletal muscle myoblast
15
natural killer cell
15
neutrophil
15
osteoblast
14
CD4-positive, alpha-beta T cell
14
T cell
14
T-helper 1 cell
14
keratinocyte
13
mammary epithelial cell
13
neurosphere
12
T-helper 17 cell
12
T-helper 2 cell
12
bronchial epithelial cell
12
endothelial cell
12
fibroblast of dermis
12
pericyte cell
11
mammary gland epithelial cell
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
dermis blood vessel endothelial cell
10
endothelial cell of hepatic sinusoid
10
fibroblast of cardiac tissue
10
kidney tubule cell
9
astrocyte
9
epithelial cell of prostate
9
macrophage
9
mature neutrophil
9
naive T cell
9
retinal pigment epithelial cell
8
epithelial cell of proximal tubule
8
fibroblast of breast
8
fibroblast of mammary gland
8
fibroblast of pulmonary artery
8
fibroblast of villous mesenchyme
8
glomerular endothelial cell
8
kidney glomerular epithelial cell
8
myoepithelial cell of mammary gland
8
pancreatic ductal cell
8
renal cortical epithelial cell
8
skeletal muscle satellite cell
8
skin fibroblast
8
smooth muscle cell
7
CD1c-positive myeloid dendritic cell
7
choroid plexus epithelial cell
7
fibroblast
7
glomerular visceral epithelial cell
7
hepatic stellate cell
7
kidney epithelial cell
7
pulmonary artery endothelial cell
6
T-cell
6
astrocyte of the cerebellum
6
astrocyte of the hippocampus
6
cardiac muscle cell
6
dermis lymphatic vessel endothelial cell
6
erythroblast
6
foreskin melanocyte
6
glutamatergic neuron
6
olfactory receptor cell
6
peripheral blood mononuclear cell
6
skeletal muscle cell
6
smooth muscle cell of the brain vasculature
5
cardiac fibroblast
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
5
alternatively activated macrophage
5
brain microvascular endothelial cell
5
fibroblast of peridontal ligament
5
iris pigment epithelial cell
5
kidney capillary endothelial cell
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
non-pigmented ciliary epithelial cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
aortic endothelial cell
4
astrocyte of the spinal cord
4
cardiac fibroblast
4
epithelial cell of esophagus
4
fibroblast of gingiva
4
fibroblast of the aortic adventitia
4
fibroblast of the conjunctiva
4
inflammatory macrophage
4
mesenchymal stem cell
4
pancreatic acinar cell
4
preadipocyte
4
renal epithelial cell
4
stromal cell of bone marrow
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
amnion mesenchymal stem cell
3
amniotic stem cell
3
blood cell
3
bone marrow cell
3
brain pericyte
3
colon epithelial cell
3
epidermal melanocyte
3
epithelial cell of amnion
3
erythroid cell
3
gabaergic neuron
3
mammary stem cell
3
mast cell
3
mononuclear cell of bone marrow
3
myotube
3
neoplastic cell
3
pancreatic A cell
3
pancreatic beta cell
3
peripheral blood stem cell
3
plasma cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
regular cardiac myocyte
3
type B pancreatic cell
3
type I muscle cell
3
type II muscle cell
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
activated CD4-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
cortical cell of adrenal gland
2
dermis microvascular lymphatic vessel endothelial cell
2
endothelial cell of coronary artery
2
enteric smooth muscle cell
2
erythroid progenitor cell
2
fat cell
2
head and neck squamous cell carcinoma
2
leukemic stem cell
2
mantle cell lymphoma cell
2
meso-epithelial cell
2
microglial cell
2
naive t cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuronal stem cell
2
oligodendrocyte
2
pancreatic alpha cell
2
pancreatic delta cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
skeletal muscle fiber
2
small cell ovarian carcinoma cell
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
somatic muscle myotube
2
type II pneumocyte
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Stromal Predominant Kidney Wilms Tumor
1
T follicular helper cell
1
T-cell lymphoma cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adipocyte
1
adult endothelial progenitor cell
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell
1
basal cell of epidermis
1
bone cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac ventricle fibroblast
1
ciliated cell
Date released
2
February, 2021
1
November, 2021
Software used
2
macs
1
abc
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
AMP
1
ENCODE
RFA
2
AMP
1
ENCODE3
annotation_type_category!
snATAC-seq
files.file_type!
tsv
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR743RKT
released
Annotation file set
: Target gene predictions of Mast Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR509ZNK
released
Annotation file set
: Histone modifications annotation for Blood Mast_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR210BYN
released
Annotation file set
: Binding sites annotation for Blood Mast_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP