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Schema
Citing CMDGA
Clear Filters
Annotation type
2
gene expression
Annotation Category
2
Gene expression levels
Annotation type Category
snATAC-seq
2
snRNA-seq
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
129
monocyte
89
heart
86
stomach
81
kidney
72
brain
68
lung
67
muscle of arm
64
HeLa-S3
63
small intestine
62
A549
62
adrenal gland
60
placenta
58
muscle of leg
56
large intestine
54
H1-hESC
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
51
neural progenitor cell
48
CD8-positive, alpha-beta T cell
48
liver
48
thymus
45
right lung
44
islet of Langerhans
43
hematopoietic multipotent progenitor cell
42
right kidney
41
K562
40
B cell
40
renal cortex interstitium
40
renal pelvis
36
left kidney
35
hepatocyte
35
spinal cord
34
spleen
33
heart left ventricle
32
CD4-positive, alpha-beta memory T cell
31
CD14-positive monocyte
31
adipose tissue
26
MCF-7
26
regulatory T cell
23
EndoC_BH1
23
T-helper 1 cell
23
sigmoid colon
23
trophoblast cell
22
CD8-positive, alpha-beta memory T cell
22
adipocyte
22
body of pancreas
22
endothelial cell
22
epithelial cell of proximal tubule
22
foreskin keratinocyte
22
pancreas
22
tibial nerve
21
T-helper 17 cell
21
caudate nucleus
20
breast cancer cell
20
glomerular endothelial cell
20
mononuclear cell
20
natural killer cell
20
ovary
20
psoas muscle
19
coronary artery
19
endothelial cell of umbilical vein
19
foreskin fibroblast
19
heart right ventricle
19
pancreatic ductal cell
19
subcutaneous adipose tissue
18
HFFc6
18
embryonic stem cell
18
gastrocnemius medialis
18
keratinocyte
18
thyroid gland
18
transverse colon
17
HepG2
17
T-helper 2 cell
17
muscle of trunk
17
osteoblast
17
right atrium auricular region
17
substantia nigra
17
testis
17
tibial artery
16
cardiac muscle cell
16
chorionic villus
16
fibroblast of lung
16
induced pluripotent stem cell
16
layer of hippocampus
16
mesenchymal stem cell
16
upper lobe of left lung
15
GM12878
15
macrophage
15
neutrophil
15
omental fat pad
15
skeletal muscle myoblast
15
skeletal muscle tissue
14
CD4-positive, alpha-beta T cell
14
H9
14
T cell
14
ascending aorta
14
endocrine pancreas
14
endothelial cell of hepatic sinusoid
14
fibroblast of cardiac tissue
14
mammary gland epithelial cell
14
prostate gland
13
Peyer's patch
13
aorta
13
bronchial epithelial cell
13
neurosphere
12
cerebellum
12
fibroblast of dermis
12
frontal cortex
12
left renal cortex interstitium
12
lymphoblastoid cell line
12
mammary epithelial cell
12
neuroblastoma cell
12
putamen
11
Ammon's horn
11
breast epithelium
11
epithelial cell of prostate
11
left cardiac atrium
11
left renal pelvis
11
naive thymus-derived CD4-positive, alpha-beta T cell
11
right renal pelvis
11
smooth muscle cell
11
temporal lobe
10
22Rv1
10
Rhabdomyosarcoma
10
choroid plexus epithelial cell
10
esophagus muscularis mucosa
10
esophagus squamous epithelium
10
gastric cancer cell
10
lymphocyte
10
neuronal stem cell
10
progenitor cell of endocrine pancreas
10
right renal cortex interstitium
10
thoracic aorta
10
trophoblast
9
SK-N-DZ
9
SK-N-SH
9
cardiomyocytes
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus
9
glomerular visceral epithelial cell
9
hepatic stellate cell
9
kidney tubule cell
9
liposarcoma
9
pancreatic acinar cell
9
parathyroid adenoma
9
pericyte cell
9
skin fibroblast
9
tongue
9
vagina
8
B-lymphoblastoid cell line
8
GM12865
8
HEK293
8
IMR-90
8
NAMALWA cell
8
astrocyte
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
fibroblast cell line
8
globus pallidus
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
mesendoderm
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
BJ cell
7
GM06990
7
GM12864
7
HT-29
7
SK-N-MC
7
T47D
7
angular gyrus
7
cardiomyocytes (cardiac muscle cell)
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of pulmonary artery
7
foreskin melanocyte
7
mature neutrophil
7
pancreatic beta cell
7
skeletal muscle satellite cell
7
stomach smooth muscle
7
uterus
6
BE(2)-C
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
Organ
2
musculature of body
Date released
2
February, 2024
Software used
2
deeptools
2
r
2
samtools
2
umitools
Lab
2
Stephen Parker, UMich
Project
2
AMP
RFA
2
AMP2
annotation_type_category!
snATAC-seq
month_released!
February, 2020
organ_slims!
eye
Showing 2 of 2 results
table-tab-icon
matrix-icon
FileSet
DSR040MIE
released
Annotation file set
: Cell type gene expression mean TPM and bw of neuromuscular junction from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR985XYU
released
Annotation file set
: Cell type gene expression mean TPM and bw of muscle fiber mixed from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP