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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
chromatin state
2
target gene predictions
1
candidate regulatory elements
1
histone modifications
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
37
HiC
8
RNA-seq
7
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
7
bed bed3+
1
bed bed9
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
cell line
1
stem cell
Biosample term
105
monocyte
81
stomach
80
heart
kidney
67
brain
65
lung
65
muscle of arm
61
A549
60
small intestine
58
adrenal gland
58
placenta
56
muscle of leg
55
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
45
thymus
44
right lung
43
CD8-positive, alpha-beta T cell
43
neural progenitor cell
41
hematopoietic multipotent progenitor cell
40
right kidney
38
renal cortex interstitium
37
liver
37
renal pelvis
36
left kidney
35
B cell
35
retina
32
CD4-positive, alpha-beta memory T cell
32
spinal cord
31
CD14-positive monocyte
30
spleen
27
heart left ventricle
25
MCF-7
24
K562
24
adipose tissue
22
CD8-positive, alpha-beta memory T cell
22
trophoblast cell
21
foreskin keratinocyte
21
sigmoid colon
20
breast cancer cell
20
mononuclear cell
20
pigmented layer of retina
19
adipocyte
18
foreskin fibroblast
18
hepatocyte
18
keratinocyte
17
body of pancreas
17
muscle of trunk
16
chorionic villus
16
embryonic stem cell
16
fibroblast of lung
16
gastrocnemius medialis
16
ovary
16
psoas muscle
16
thyroid gland
16
transverse colon
15
HepG2
15
endothelial cell of umbilical vein
15
layer of hippocampus
15
natural killer cell
15
regulatory T cell
15
tibial nerve
15
upper lobe of left lung
14
cardiac muscle cell
14
endocrine pancreas
14
testis
13
HeLa-S3
13
T-helper 1 cell
13
T-helper 17 cell
13
T-helper 2 cell
13
coronary artery
13
fibroblast of cardiac tissue
13
mammary gland epithelial cell
13
neurosphere
13
skeletal muscle tissue
12
CD4-positive, alpha-beta T cell
12
Peyer's patch
12
T cell
12
bronchial epithelial cell
12
caudate nucleus
12
fibroblast of dermis
12
heart right ventricle
12
neuroblastoma cell
12
pancreas
12
retinal pigment epithelial cell
12
skeletal muscle myoblast
11
EndoC_BH1
11
mammary epithelial cell
11
mesenchymal stem cell
11
osteoblast
11
prostate gland
11
temporal lobe
10
22Rv1
10
H9
10
epithelial cell of prostate
10
gastric cancer cell
10
substantia nigra
10
thoracic aorta
10
tibial artery
9
GM12878
9
Rhabdomyosarcoma
9
SK-N-SH
9
aorta
9
breast epithelium
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
endothelial cell of hepatic sinusoid
9
esophagus squamous epithelium
9
islet of Langerhans
9
left renal cortex interstitium
9
liposarcoma
9
neuronal stem cell
9
neutrophil
9
omental fat pad
9
parathyroid adenoma
9
pericyte cell
9
right renal cortex interstitium
8
H1-hESC
8
HEK293
8
IMR-90
8
astrocyte
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
endodermal cell
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
pituitary stalk
8
right atrium auricular region
8
right renal pelvis
8
smooth muscle cell
8
tongue
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
GM12875
7
HAP-1
7
HL-60
7
HT-29
7
LNCaP clone FGC
7
NAMALWA cell
7
SK-N-DZ
7
SK-N-MC
7
T47D
7
angular gyrus
7
cerebellum
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
endothelial cell
7
esophageal adenocarcinoma
7
eye
7
fibroblast cell line
7
foreskin melanocyte
7
left cardiac atrium
7
left renal pelvis
7
limb
7
mature neutrophil
7
stomach smooth muscle
7
trophoblast
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CD1c-positive myeloid dendritic cell
6
CD4-positive helper T cell
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
GM19238
6
GM19239
6
GM19240
6
GM23248
6
Jurkat
6
KARPAS-422 cell
6
LoVo cell
6
MG63
6
WERI-Rb-1
6
WI38
6
ascending aorta
6
chondrocyte
6
chorion membrane
6
esophagus
6
esophagus muscularis mucosa
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of pulmonary artery
6
hESC cell
6
kidney tubule cell
6
mesodermal cell
Organ
8
embryo
Life stage
4
embryonic
Date released
3
September, 2022
2
February, 2021
1
August, 2017
1
May, 2021
1
October, 2022
Software used
3
chromhmm
2
macs
2
r
1
abc
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
biosample_term_name!
kidney
files.file_type!
bigBed narrowPeak
Showing 8 of 8 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR922GBW
released
Annotation file set
: enhancer-gene predicton of H1-hESC-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP