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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
gene expression
2
accessible chromatin
1
target gene predictions
Annotation Category
3
Gene expression levels
2
cis-regulatory elements
1
Target gene links
Annotation type Category
32
ChIP-seq
25
DNase-seq
4
snATAC-seq
3
ATAC-seq
3
RNA-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
3
bed bed3+
3
tsv
2
bigWig
File set status
6
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
Biosample term
36
monocyte
35
islet of Langerhans
23
retina
20
EndoC_BH1
20
pigmented layer of retina
18
subcutaneous adipose tissue
17
hepatocyte
17
induced pluripotent stem cell
17
neural progenitor cell
15
CD14-positive monocyte
15
kidney
11
cardiomyocytes
11
coronary artery
11
endothelial cell
11
liver
11
regulatory T cell
10
T-helper 1 cell
10
pituitary stalk
9
H1-hESC
9
T-helper 17 cell
9
adipose tissue
9
macrophage
9
pericyte cell
9
right atrium auricular region
tibial nerve
8
adipocyte
8
endothelial cell of hepatic sinusoid
8
omental fat pad
8
smooth muscle cell
8
tibial artery
7
CD8-positive, alpha-beta T cell
7
body of pancreas
7
cerebellum
7
embryonic stem cell
7
frontal cortex
7
putamen
7
substantia nigra
6
T-helper 2 cell
6
amygdala
6
anterior cingulate cortex
6
caudate nucleus
6
dendritic cell
6
fibroblast
6
glutamatergic neuron
6
hypothalamus
6
lymphoblastoid cell line
6
memory B cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
nucleus accumbens
6
retinal pigment epithelial cell
5
Ammon's horn
5
B cell
5
C1 segment of cervical spinal cord
5
CD4-positive helper T cell
5
SGBS preadipocytes
5
T follicular helper cell
5
ascending aorta
5
astrocyte
5
cardiac precursors (cardiac muscle cell)
5
central memory CD8-positive, alpha-beta T cell
5
cerebellum (Hemisphere)
5
chondrocyte
5
effector memory CD8-positive, alpha-beta T cell
5
gastrocnemius medialis(Muscle - Skeletal)
5
left ventricle myocardium
5
osteoblast
5
right lobe of liver
4
adrenal gland
4
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
gamma-delta T cell
4
heart left ventricle
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
smooth muscle cell of the coronary artery
4
spleen
4
stomach
4
visceral abdominal adipose tissue
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
blood cell
3
bone tissue
3
brain
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
gabaergic neuron
3
heart
3
keratinocyte
3
naive B cel
3
naive B cell
3
naive regulatory T cell
3
natural killer cell
3
neutrophil
3
ovary
3
pancreas
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic ductal cell
3
skeletal muscle tissue
3
skin of body
3
type B pancreatic cell
3
uterus
2
BJAB cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T cell
2
T-cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
aortic endothelial cell
2
articular chondrocyte
2
blood
2
blood vessel smooth muscle cell
2
cardiac muscle cell
2
cartilage tissue
2
cortical cell of adrenal gland
2
differentiating adipose-derived stem cell
2
dorsolateral prefrontal cortex
2
enteric smooth muscle cell
2
excitatory neuron
2
fat cell
2
glomerular visceral epithelial cell
2
hippocampal neuron
2
iPSC derived cell line
2
kidney glomerular epithelial cell
2
lower motor neuron
2
luminal epithelial cell of mammary gland
2
lung
2
mesenchymal stem cell
2
microglial cell
2
minor salivary gland
2
muscle
2
myeloid dendritic cell
2
oligodendrocyte
2
pancreatic alpha cell
2
pancreatic beta cell
2
placenta
2
plasma cell
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
small intestine
2
smooth muscle cell of the esophagus
2
spinal cord
2
testis
2
thoracic aorta
2
thyroid gland
2
transverse colon
2
trophoblast cell
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
vagina
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
B-1a B cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Leydig cell
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
S-shaped body
1
SK-N-SH
1
abdominal aorta artery
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
aorta wall
1
basal cell
1
basal cell of epidermis
Date released
4
May, 2021
2
May, 2020
Software used
3
r
1
abc
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
tibial nerve
Showing 6 of 6 results
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Download
FileSet
DSR534CRD
released
Annotation file set
: GSE118165 gene expression annotation of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR630ZBK
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627YNJ
released
Annotation file set
: Gene expression annotation of mesodermal cell_cardiomyocyte intermediate (CI) ISL1+TNNT2+ on day 6 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143KXJ
released
Annotation file set
: enhancer-gene predicton of B_cell-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR086SNH
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR709UFN
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP