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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
caQTL
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
32
ChIP-seq
24
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
in vitro differentiated cells
Biosample term
29
endothelial cell
29
fibroblast
22
macrophage
21
pericyte cell
21
retina
20
pigmented layer of retina
20
smooth muscle cell
18
monocyte
15
CD14-positive monocyte
13
excitatory neuron
12
adipocyte
12
pancreatic beta cell
11
astrocyte
11
pancreatic alpha cell
10
B cell
10
hepatocyte
10
neural progenitor cell
10
pancreatic acinar cell
10
pancreatic delta cell
10
pituitary stalk
9
EndoC_BH1
9
pancreatic ductal cell
8
CD8-positive, alpha-beta T cell
8
T cell
8
glutamatergic neuron
8
natural killer cell
7
dendritic cell
7
endothelial cell of lymphatic vessel
islet of Langerhans
7
kidney
7
retinal pigment epithelial cell
7
skeletal muscle fiber
7
type II pneumocyte
6
colon epithelial cell
6
cortical cell of adrenal gland
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
erythroblast
6
keratinocyte
6
mast cell
6
memory B cell
6
skeletal muscle satellite cell
5
CD4-positive helper T cell
5
SGBS preadipocytes
5
basal cell
5
chondrocyte
5
coronary artery
5
endocardial cell
5
gabaergic neuron
5
inhibitory neuron
5
liver
5
myofibroblast cell
5
type I muscle cell
5
type II muscle cell
4
adipose tissue
4
blood vessel smooth muscle cell
4
enteric smooth muscle cell
4
luminal epithelial cell of mammary gland
4
mesenchymal stem cell
4
mesothelial cell
4
naive B cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
pancreatic polypeptide-secreting cell
4
regulatory T cell
4
smooth muscle cell of the esophagus
4
type I pneumocyte
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
cardiac muscle cell
3
ciliated cell
3
club cell
3
enteric neuron
3
fibroblast of cardiac tissue
3
goblet cell
3
mammary gland epithelial cell
3
megakaryocyte
3
neuronal stem cell
3
oligodendrocyte
3
oligodendrocyte precursor cell
3
osteoblast
3
pancreatic A cell
3
pancreatic stellate cell
3
parietal cell
3
peptic cell
3
plasma cell
3
plasmacytoid dendritic cell
3
schwann cell
3
smooth muscle cell of the coronary artery
3
subcutaneous adipose tissue
3
thyroid follicular cell
3
type B pancreatic cell
2
BJAB cell
2
CD4-positive, alpha-beta T cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
Schwann cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adipose-derived stem cell
2
adrenal gland
2
alveolar macrophage
2
aortic endothelial cell
2
basal cell of epidermis
2
capillary endothelial cell
2
cardiac endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cholangiocyte
2
colon goblet cell
2
conventional dendritic cell
2
differentiating adipose-derived stem cell
2
eccrine cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
2
enterocyte of epithelium of small intestine
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
2
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
2
heart left ventricle
2
hepatic stellate cell
2
intestinal tuft cell
2
leukocyte
2
luteal cell
2
mature NK T cell
2
mature natural killer cell
2
melanocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
microglial cell
2
myoepithelial cell
2
naive regulatory T cell
2
naive t cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuron
2
non keratinizing barrier epithelial cell
2
non-classical monocyte
2
pancreas
2
paneth cell
2
regular atrial cardiac myocyte
2
regular ventricular cardiac myocyte
2
respiratory goblet cell
2
right atrium auricular region
2
skeletal muscle fibroblast
2
skin fibroblast
2
small intestine goblet cell
2
spleen
2
stellate neuron
2
stomach
2
stomach neuroendocrine cell
2
stromal cell
2
thoracic aorta
2
tibial artery
2
tibial nerve
2
trophoblast cell
2
type I cell of adrenal cortex
2
type II cell of adrenal cortex
2
uterine smooth muscle cell
2
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
Organ
4
connective tissue
Life stage
1
unknown
Date released
1
February, 2024
1
May, 2021
1
May, 2022
1
October, 2022
Software used
2
macs
1
abc
1
eigenmt
1
rasqual
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
2
AMP
2
AMP2
biosample_term_name!
islet of Langerhans
Showing 4 of 4 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP