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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
target gene predictions
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
8
ChIP-seq
6
DNase-seq
4
ATAC-seq
2
H3K27ac ChIP-Seq
2
RNA-seq
2
snATAC-seq
1
DNA methylation profiling by array assay
1
pCHi-C
Available data
4
bed bed3+
2
bigWig
File set status
4
released
Genome assembly (visualization)
17
hg19
GRCh38
Organism
2
Homo sapiens
Biosample type
2
cell line
2
primary cell
Biosample term
21
retina
20
pigmented layer of retina
15
CD14-positive monocyte
10
pituitary stalk
8
EndoC_BH1
7
adipocyte
6
dendritic cell
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
4
CD8-positive, alpha-beta T cell
4
adipose tissue
4
glutamatergic neuron
3
B cell
3
liver
3
monocyte
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
coronary artery
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
islet of Langerhans
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
regulatory T cell
2
stomach
2
trophoblast cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
common myeloid progenitor, CD34-positive
1
endothelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gabaergic neuron
1
gastrocnemius medialis
1
glomerular visceral epithelial cell
1
heart left ventricle
1
hepatocyte
1
iPS DF 19.11
1
immature natural killer cell
1
induced pluripotent stem cell
1
keratinocyte
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
macrophage
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
microglial cell/astrocyte
1
muscle of leg
1
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
non-neuronal cell
1
oligodendrocyte
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic acinar cell
1
pancreatic ductal cell
1
placenta
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
psoas muscle
1
renal intercalated cell
1
renal principal cell
1
right atrium auricular region
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
subcutaneous adipose tissue
1
thoracic aorta
1
thymus
1
thyroid gland
1
tibial artery
1
tibial nerve
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Organ
1
intestine
1
large intestine
Date released
2
May, 2020
2
May, 2021
Software used
2
abc
Lab
2
AMP-T2D consortium
2
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
assembly!
GRCh38
software_used.software.name!
r
Showing 4 of 4 results
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Download
FileSet
DSR797VJC
released
Annotation file set
: enhancer-gene predicton of HT29 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR157QFX
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal monocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR125CHQ
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated monocyte
Lab:
AMP-T2D consortium
Project:
AMP