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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
7
snATAC-seq
3
ATAC-seq
1
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
13
monocyte
10
neural progenitor cell
9
pericyte cell
7
kidney
6
endothelial cell
6
hepatocyte
6
smooth muscle cell
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
islet of Langerhans
3
CD4-positive helper T cell
3
astrocyte
3
colon epithelial cell
coronary artery
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
blood vessel smooth muscle cell
2
cortical cell of adrenal gland
2
enteric smooth muscle cell
2
gabaergic neuron
2
glutamatergic neuron
2
keratinocyte
2
liver
2
luminal epithelial cell of mammary gland
2
osteoblast
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
type B pancreatic cell
2
type II pneumocyte
1
CD4-positive, alpha-beta T cell
1
CD8-positive, alpha-beta T cell
1
EndoC_BH1
1
HepG2
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors
1
ciliated cell
1
club cell
1
colon goblet cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
excitatory neuron
1
fat cell
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
granular cell of epidermis
1
heart
1
heart left ventricle
1
hippocampal neuron
1
intestinal tuft cell
1
kidney glomerular epithelial cell
1
lower motor neuron
1
luteal cell
1
macrophage
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
memory B cell
1
mesothelial cell
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
oligodendrocyte precursor cell
1
omental fat pad
1
pancreas
1
pancreatic alpha cell
1
pancreatic delta cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasma cell
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
right atrium auricular region
1
schwann cell
1
skeletal muscle fibroblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
spleen
1
stomach neuroendocrine cell
1
stromal cell
1
thoracic aorta
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Life stage
1
embryonic
Date released
2
November, 2021
1
January, 2022
Software used
2
abc
1
macs
Lab
2
Bing Ren, UCSD
1
AMP-T2D consortium
Project
2
ENCODE
1
AMP
RFA
2
ENCODE3
1
AMP
biosample_term_name!
coronary artery
Showing 3 of 3 results
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Download
FileSet
DSR571UAN
released
Annotation file set
: Target gene predictions of Astrocyte 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR563FTC
released
Annotation file set
: Target gene predictions of Astrocyte 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR846FJI
released
Annotation file set
: Accessible chromatin annotation from ATAC-seq_human primary fetal astrocytes batch 2; Homo sapiens; ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP