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Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
Annotation Category
7
cis-regulatory elements
Annotation type Category
62
ChIP-seq
47
DNase-seq
8
RNA-seq
7
ATAC-seq
Available data
7
bed bed3+
7
bigWig
File set status
7
released
Genome assembly (visualization)
7
GRCh38
7
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
21
retina
20
pigmented layer of retina
16
monocyte
15
CD14-positive monocyte
10
neural progenitor cell
10
pituitary stalk
9
EndoC_BH1
7
adipocyte
7
kidney
6
dendritic cell
6
embryonic stem cell
6
hepatocyte
6
islet of Langerhans
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
coronary artery
5
liver
4
CD8-positive, alpha-beta T cell
4
adipose tissue
4
endothelial cell of hepatic sinusoid
4
glutamatergic neuron
3
B cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
osteoblast
3
subcutaneous adipose tissue
2
BJAB cell
2
CD4-positive helper T cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
T follicular helper cell
2
T-cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
adrenal gland
2
aortic endothelial cell
2
astrocyte
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
heart left ventricle
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell
2
pancreas
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
regulatory T cell
2
right atrium auricular region
2
smooth muscle cell of the coronary artery
2
spleen
2
stomach
2
thoracic aorta
2
tibial artery
2
tibial nerve
2
trophoblast cell
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
B cell, CD19-positive
1
CD56-positive, CD161-positive immature natural killer cell
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Heart fetal (cardiac muscle cell)
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
Liver fetal (hepatocyte)
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
common myeloid progenitor, CD34-positive
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
endothelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of prostate
1
erythroblast
1
excitatory neuron
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
foreskin fibroblast
1
gabaergic neuron
1
gastrocnemius medialis
1
glomerular visceral epithelial cell
1
heart
1
hippocampal neuron
1
iPS DF 19.11
1
immature natural killer cell
1
induced pluripotent stem cell
1
keratinocyte
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
large intestine
1
lower motor neuron
1
macrophage
1
mammary epithelial cell
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal stem cell
1
mesendoderm
1
microglial cell/astrocyte
1
muscle of leg
muscle of trunk
1
myeloid dendritic cell
1
myotube
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
non-neuronal cell
1
oligodendrocyte
1
omental fat pad
1
ovary
1
pancreatic A cell
1
pancreatic alpha cell
1
placenta
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
renal intercalated cell
1
renal principal cell
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
spinal cord
1
thymus
1
thyroid gland
1
transverse colon
1
type B pancreatic cell
1
uterus
1
white adipose tissue
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
7
kidney
Date released
7
August, 2021
Software used
7
macs
Lab
7
Katalin Susztak, Upenn
Project
7
AMP
RFA
7
AMP2
biosample_term_name!
GM12878
muscle of trunk
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP