Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
52
ChIP-seq
24
DNase-seq
14
snATAC-seq
6
scRNA-seq
4
ATAC-seq
2
RNA-seq
1
pCHi-C
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
2
Homo sapiens
Biosample type
4
primary cell
Biosample term
21
retina
20
pigmented layer of retina
15
monocyte
10
neural progenitor cell
9
EndoC_BH1
9
pericyte cell
7
endothelial cell
7
kidney
6
embryonic stem cell
6
glutamatergic neuron
6
hepatocyte
6
islet of Langerhans
6
retinal pigment epithelial cell
6
smooth muscle cell
5
SGBS preadipocytes
5
chondrocyte
4
coronary artery
4
endothelial cell of hepatic sinusoid
4
fibroblast
4
liver
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
adipocyte
3
adipose tissue
3
astrocyte
3
colon epithelial cell
3
gabaergic neuron
3
memory B cell
3
subcutaneous adipose tissue
2
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
blood vessel smooth muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
cortical cell of adrenal gland
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enteric smooth muscle cell
2
gamma-delta T cell
2
heart left ventricle
2
keratinocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
oligodendrocyte
2
osteoblast
2
pancreatic A cell
2
pancreatic acinar cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
plasma cell
2
regulatory T cell
2
right atrium auricular region
2
smooth muscle cell of the esophagus
2
thoracic aorta
2
tibial artery
2
tibial nerve
2
type B pancreatic cell
2
type II pneumocyte
1
Adipose SGBS cell line (adipocyte)
1
CD4-positive, alpha-beta T cell
1
Heart fetal (cardiac muscle cell)
1
HepG2
1
Liver fetal (hepatocyte)
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
alveolar macrophage
1
basal cell
1
basal cell of epidermis
1
cardiac endothelial cell
1
cardiac muscle cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
ciliated cell
1
club cell
1
colon goblet cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
excitatory neuron
1
fat cell
1
fibroblast of cardiac tissue
1
foveolar cell of stomach
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
heart
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lower motor neuron
1
luteal cell
1
macrophage
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
melanocyte
1
mesothelial cell
1
microglial cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myoepithelial cell
1
naive t cell
1
natural killer cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non keratinizing barrier epithelial cell
1
non-neuronal cell
1
oligodendrocyte precursor cell
1
omental fat pad
1
pancreas
1
pancreatic alpha cell
1
pancreatic delta cell
1
paneth cell
1
parietal cell
1
peptic cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
regular atrial cardiac myocyte
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
schwann cell
1
skeletal muscle fibroblast
1
skeletal muscle satellite cell
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
spleen
1
stomach neuroendocrine cell
1
stromal cell
1
thyroid follicular cell
1
type I cell of adrenal cortex
1
type I muscle cell
1
type I pneumocyte
1
type II cell of adrenal cortex
1
type II muscle cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Organ
2
epithelium
2
pancreas
Life stage
1
adult
1
newborn
Date released
2
May, 2020
2
October, 2019
Software used
2
macs
Lab
4
AMP-T2D consortium
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
lab.title!
Jesse Engreitz, Stanford University
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR086SNH
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR709UFN
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated B cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR112LAM
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 2 children samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR616QUT
released
Annotation file set
: Pancreatic beta cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP