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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
1
target gene predictions
Annotation Category
6
cis-regulatory elements
1
Target gene links
Annotation type Category
26
ChIP-seq
14
DNase-seq
7
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
tissue
Biosample term
21
retina
20
pigmented layer of retina
10
neural progenitor cell
10
pituitary stalk
9
EndoC_BH1
7
adipocyte
7
kidney
6
dendritic cell
6
embryonic stem cell
6
islet of Langerhans
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
5
coronary artery
5
liver
4
adipose tissue
3
Pancreatic progenitors (progenitor cell of endocrine pancreas)
3
subcutaneous adipose tissue
2
BJAB cell
2
HepG2
2
Jurkat
2
MCF 10A cell
2
THP-1
2
U937
2
adipose-derived stem cell
2
adrenal gland
2
differentiating adipose-derived stem cell
2
heart left ventricle
2
pancreas
2
right atrium auricular region
2
spleen
2
stomach
2
thoracic aorta
2
tibial artery
2
tibial nerve
1
A549
1
A673
1
Adipose SGBS cell line (adipocyte)
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Preadipose SGBS cell line (adipocyte)
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
cardiac muscle cell
1
cardiac precursors
1
cardiac precursors (cardiac muscle cell)
1
cardiac ventricle
1
cardiomyocytes (cardiac muscle cell)
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
excitatory neuron
1
gastrocnemius medialis
1
heart
1
hippocampal neuron
1
iPS DF 19.11
1
induced pluripotent stem cell
1
large intestine
1
lower motor neuron
1
macrophage
1
mesenchymal stem cell
1
mesendoderm
1
monocyte
1
muscle of leg
1
muscle of trunk
1
myotube
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
omental fat pad
1
ovary
1
placenta
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
sigmoid colon
1
skeletal muscle myoblast
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
thymus
1
thyroid gland
1
transverse colon
1
trophoblast cell
1
uterus
1
white adipose tissue
Organ
1
limb
1
musculature of body
Date released
6
May, 2021
1
November, 2022
Software used
6
macs
1
abc
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
1
Struan F.A. Grant, CHOP
Project
7
AMP
RFA
6
AMP
1
AMP2
biosample_term_name!
duodenal mucosa
biosample_type!
primary cell
Showing 7 of 7 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR734DGW
released
Annotation file set
: enhancer-gene predicton of gastrocnemius_medialis-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP