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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
36
ChIP-seq
25
DNase-seq
6
RNA-seq
5
ATAC-seq
3
RNA microarray
2
Expression arrays
1
H3K27ac ChIP-Seq
1
HiC
1
pCHi-C
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
21
retina
20
pigmented layer of retina
7
kidney
6
islet of Langerhans
5
coronary artery
5
liver
4
adipose tissue
3
subcutaneous adipose tissue
2
adrenal gland
2
heart left ventricle
2
pancreas
2
right atrium auricular region
2
spleen
2
stomach
2
thoracic aorta
2
tibial artery
2
tibial nerve
1
beige adipocyte
1
body of pancreas
breast epithelium
1
cardiac ventricle
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
gastrocnemius medialis
1
heart
1
large intestine
1
muscle of leg
1
muscle of trunk
1
omental fat pad
1
ovary
1
placenta
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
sigmoid colon
1
small intestine
1
spinal cord
1
thymus
1
thyroid gland
1
transverse colon
1
uterus
1
white adipose tissue
Organ
5
liver
Life stage
1
adult
1
embryonic
Date released
2
May, 2022
1
May, 2021
1
November, 2019
1
September, 2018
Software used
3
macs
1
abc
1
eigenmt
1
rasqual
Lab
2
AMP-T2D consortium
2
Karen Mohlke, UNC
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
breast epithelium
Showing 5 of 5 results
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Download
FileSet
DSR303OZW
released
Annotation file set
: Accessible chromatin annotation(consensus peaks) of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR494KQG
released
Annotation file set
: enhancer-gene predicton of liver-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR815GWW
released
Annotation file set
: Accessible chromatin annotation of embryonic liver
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR027RWS
released
Annotation file set
: ATAC-seq sites in right lobe of liver for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP