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Schema
Citing CMDGA
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Annotation type
8
accessible chromatin
Annotation Category
8
cis-regulatory elements
Annotation type Category
71
ChIP-seq
55
DNase-seq
15
RNA-seq
8
ATAC-seq
Available data
8
bed bed3+
8
bigWig
File set status
8
released
Genome assembly (visualization)
8
GRCh38
8
hg19
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
21
retina
20
pigmented layer of retina
7
kidney
6
islet of Langerhans
5
coronary artery
5
liver
4
adipose tissue
3
subcutaneous adipose tissue
2
adrenal gland
2
heart left ventricle
2
pancreas
2
right atrium auricular region
2
spleen
2
stomach
2
thoracic aorta
2
tibial artery
2
tibial nerve
1
beige adipocyte
1
body of pancreas
1
breast epithelium
1
cardiac ventricle
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
gastrocnemius medialis
1
heart
1
large intestine
1
muscle of leg
1
muscle of trunk
1
omental fat pad
1
ovary
1
placenta
1
proximal epiphysis
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
psoas muscle
1
sigmoid colon
1
small intestine
1
spinal cord
1
thymus
1
thyroid gland
1
transverse colon
1
uterus
1
white adipose tissue
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
7
kidney
1
adipose tissue
1
connective tissue
Life stage
1
adult
Date released
7
August, 2021
1
September, 2018
Software used
8
macs
Lab
7
Katalin Susztak, Upenn
1
AMP-T2D consortium
Project
8
AMP
RFA
7
AMP2
1
AMP
biosample_term_name!
right lobe of liver
Showing 8 of 8 results
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Download
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
TSTSR419KCH
released
Annotation file set
: ATAC-seq sites in omental fat pad for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP