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Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
DNase-seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
1
bed bed3+
1
bed bed9
1
bigBed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
in vitro differentiated cells
2
primary cell
Biosample term
92
monocyte
85
heart
84
stomach
70
brain
67
muscle of arm
66
kidney
65
lung
62
A549
61
small intestine
59
adrenal gland
59
placenta
58
muscle of leg
56
large intestine
54
common myeloid progenitor, CD34-positive
54
muscle of back
52
left lung
46
thymus
45
right lung
42
right kidney
40
CD8-positive, alpha-beta T cell
40
renal cortex interstitium
40
renal pelvis
36
left kidney
34
liver
34
spinal cord
32
CD4-positive, alpha-beta memory T cell
31
B cell
31
CD14-positive monocyte
29
spleen
28
heart left ventricle
26
MCF-7
25
K562
22
CD8-positive, alpha-beta memory T cell
22
sigmoid colon
21
adipose tissue
20
breast cancer cell
20
mononuclear cell
19
foreskin fibroblast
19
foreskin keratinocyte
18
body of pancreas
18
endothelial cell of umbilical vein
18
gastrocnemius medialis
18
trophoblast cell
17
muscle of trunk
17
ovary
17
pancreas
17
psoas muscle
17
retina
17
thyroid gland
17
transverse colon
16
chorionic villus
16
fibroblast of lung
16
heart right ventricle
16
keratinocyte
16
tibial nerve
16
upper lobe of left lung
15
HepG2
15
caudate nucleus
15
layer of hippocampus
14
endocrine pancreas
14
regulatory T cell
14
skeletal muscle myoblast
13
HeLa-S3
13
Peyer's patch
13
bronchial epithelial cell
13
fibroblast of cardiac tissue
13
natural killer cell
13
neurosphere
13
osteoblast
13
skeletal muscle tissue
12
T cell
12
fibroblast of dermis
12
hepatocyte
12
left renal cortex interstitium
12
mammary epithelial cell
12
neuroblastoma cell
12
prostate gland
11
CD4-positive, alpha-beta T cell
11
T-helper 1 cell
11
T-helper 17 cell
11
breast epithelium
11
coronary artery
11
epithelial cell of prostate
11
left renal pelvis
11
right renal pelvis
11
temporal lobe
11
tibial artery
10
22Rv1
10
GM12878
10
H9
10
Rhabdomyosarcoma
10
T-helper 2 cell
10
choroid plexus epithelial cell
10
esophagus squamous epithelium
10
gastric cancer cell
10
left cardiac atrium
10
mammary gland epithelial cell
10
right renal cortex interstitium
10
substantia nigra
9
H1-hESC
9
HEK293
9
IMR-90
9
SK-N-DZ
9
SK-N-SH
9
aorta
9
colonic mucosa
9
kidney tubule cell
9
liposarcoma
9
neutrophil
9
parathyroid adenoma
9
tongue
9
trophoblast
8
GM06990
8
GM12864
8
GM12865
8
HAP-1
8
HL-60
8
HT-29
8
NAMALWA cell
8
ascending aorta
8
cardiac muscle cell
8
cingulate gyrus
8
dermis blood vessel endothelial cell
8
duodenal mucosa
8
esophagus muscularis mucosa
8
globus pallidus
8
hepatic stellate cell
8
immortal human breast epithelial cell line cell
8
limb
8
lower leg skin
8
myoepithelial cell of mammary gland
8
naive T cell
8
omental fat pad
8
pituitary stalk
8
right atrium auricular region
8
thoracic aorta
7
AG04449 cell
7
AG04450 cell
7
AG09309 cell
7
AG09319 cell
7
AG10803 cell
7
B-lymphoblastoid cell line
7
BE(2)-C
7
BJ cell
7
CD1c-positive myeloid dendritic cell
7
CMK
7
Caco-2 cell
7
GM12875
7
GM19240
7
GM23248
7
Jurkat
7
KARPAS-422 cell
7
LNCaP clone FGC
7
LoVo cell
7
MM.1S
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
angular gyrus
7
cerebellum
7
chorion membrane
7
dermis lymphatic vessel endothelial cell
7
endometrium adenocarcinoma
7
eye
7
fibroblast cell line
7
fibroblast of pulmonary artery
7
frontal cortex
7
mature neutrophil
7
putamen
7
skin fibroblast
7
stomach smooth muscle
6
Ammon's horn
6
Brodmann (1909) area 46
6
Daoy
6
GM08714
6
GM10248
6
GM10266
6
GM12891
6
GM12892
6
GM19238
6
GM19239
6
H7-hESC
6
HUES6
6
HuH-7
6
LHCN-M2
6
LNCAP
6
MG63
6
OCI-LY7
6
PC-9
6
SJSA1
6
SW480
6
WI38
6
diffuse intrinsic pontine glioma
6
esophagus
6
fibroblast of breast
6
fibroblast of mammary gland
6
fibroblast of villous mesenchyme
6
glomerular endothelial cell
6
midbrain
6
middle frontal gyrus
Organ
2
connective tissue
Life stage
2
adult
Date released
1
February, 2021
1
October, 2019
Software used
1
chromhmm
1
encode-ccres
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_type!
in vitro differentiated cells
organ_slims!
testis
Showing 2 of 2 results
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Download
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP