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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
hQTL
2
histone modifications
1
binding sites
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
17
RNA-seq
5
ChIP-seq
3
ATAC-seq
3
DNase-seq
2
snATAC-seq
1
DNA methylation profiling by array assay
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
89
hg19
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
60
stomach
58
heart
49
brain
49
lung
49
muscle of arm
46
kidney
44
small intestine
43
placenta
42
A549
42
adrenal gland
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
muscle of leg
39
left lung
38
CD8-positive, alpha-beta T cell
33
right lung
33
thymus
31
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
25
liver
24
B cell
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
22
spleen
20
breast cancer cell
19
MCF-7
17
K562
17
foreskin keratinocyte
16
heart left ventricle
16
neural progenitor cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin fibroblast
15
trophoblast cell
14
mononuclear cell
14
sigmoid colon
12
CD14-positive monocyte
12
adipose tissue
12
keratinocyte
12
layer of hippocampus
12
neuroblastoma cell
12
ovary
12
transverse colon
12
upper lobe of left lung
11
CD4-positive, alpha-beta T cell
11
adipocyte
11
chorionic villus
11
fibroblast of lung
11
gastrocnemius medialis
11
muscle of trunk
11
psoas muscle
11
testis
11
thyroid gland
10
Peyer's patch
10
body of pancreas
10
bronchial epithelial cell
10
cardiac muscle cell
10
endocrine pancreas
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
mammary epithelial cell
10
natural killer cell
10
skeletal muscle tissue
9
HeLa-S3
9
Rhabdomyosarcoma
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
heart right ventricle
9
liposarcoma
9
neurosphere
9
prostate gland
9
regulatory T cell
9
retina
8
22Rv1
8
H9
8
HepG2
8
T cell
8
fibroblast of dermis
8
mammary gland epithelial cell
8
neuronal stem cell
8
osteoblast
8
pancreas
8
skeletal muscle myoblast
8
temporal lobe
8
tibial nerve
7
B-lymphoblastoid cell line
7
GM12878
7
HEK293
7
T-helper 1 cell
7
breast epithelium
7
colonic mucosa
7
embryonic stem cell
7
esophageal adenocarcinoma
7
fibroblast cell line
7
left renal cortex interstitium
7
lower leg skin
7
mature neutrophil
7
neutrophil
7
right renal pelvis
7
substantia nigra
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12875
6
H1-hESC
6
HL-60
6
IMR-90
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
aorta
6
cingulate gyrus
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus squamous epithelium
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
mesenchymal stem cell
6
neuroblastoma cell line
6
omental fat pad
6
parathyroid adenoma
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD14-positive, CD16-negative classical monocyte
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM08714
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
KARPAS-422 cell
5
LHCN-M2
5
LNCaP clone FGC
5
MG63
5
MM.1S
5
NT2-D1 cell
5
OCI-LY1
5
OCI-LY7
5
PC-3
5
RWPE1
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
dermis blood vessel endothelial cell
5
endodermal cell
5
esophagus muscularis mucosa
5
foreskin melanocyte
5
hepatocyte
5
left renal pelvis
5
mucosa of rectum
5
myoepithelial cell of mammary gland
5
osteosarcoma
5
prostate cancer cell line
5
right renal cortex interstitium
5
skin fibroblast
5
thoracic aorta
5
tongue
5
trophoblast
4
Brodmann (1909) area 46
4
Daoy
4
GM10248
4
GM10266
4
GM12873
4
HK-2 cell
4
HS-SY-2 cell
4
HUES6
4
HUES64
4
HuH-7
4
Jurkat
4
KBM-7
4
LNCAP
4
LoVo cell
4
Mantle cell lymphoma
4
NB4
4
OCI-LY3
4
PC-9
4
RPMI8226
4
Rh-4 cell
4
SJSA1
4
T-cell acute lymphoblastic leukemia
4
T47D
Life stage
2
adult
Date released
3
February, 2021
2
May, 2021
Software used
5
macs
2
limix
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
assembly!
GRCh38
biosample_term_name!
WERI-Rb-1
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR650UBZ
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K4me1 ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930EID
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR258GDK
released
Annotation file set
: Histone modifications annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR084XKT
released
Annotation file set
: Histone modifications annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR431VOC
released
Annotation file set
: Binding sites annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP