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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
79
heart
79
stomach
67
brain
65
lung
65
muscle of arm
62
kidney
60
A549
59
small intestine
57
placenta
56
adrenal gland
55
muscle of leg
54
large intestine
54
muscle of back
52
left lung
44
right lung
44
thymus
41
hematopoietic multipotent progenitor cell
40
right kidney
38
renal cortex interstitium
37
renal pelvis
36
left kidney
32
liver
32
neural progenitor cell
31
spinal cord
28
spleen
25
heart left ventricle
24
MCF-7
23
K562
20
breast cancer cell
20
sigmoid colon
19
adipose tissue
16
body of pancreas
16
chorionic villus
16
muscle of trunk
15
gastrocnemius medialis
15
layer of hippocampus
15
ovary
15
psoas muscle
15
thyroid gland
15
transverse colon
15
upper lobe of left lung
14
endocrine pancreas
14
testis
13
HepG2
13
Peyer's patch
13
adipocyte
13
retina
13
skeletal muscle tissue
13
tibial nerve
12
HeLa-S3
12
caudate nucleus
12
heart right ventricle
12
neuroblastoma cell
11
prostate gland
11
temporal lobe
10
22Rv1
10
gastric cancer cell
10
substantia nigra
9
H9
9
Rhabdomyosarcoma
9
SK-N-DZ
9
SK-N-SH
9
aorta
9
cardiac muscle cell
9
colonic mucosa
9
diffuse intrinsic pontine glioma
9
esophagus squamous epithelium
9
left renal cortex interstitium
9
liposarcoma
9
pancreas
9
parathyroid adenoma
9
right renal cortex interstitium
8
GM12878
8
HEK293
8
NAMALWA cell
8
breast epithelium
8
cingulate gyrus
8
coronary artery
8
duodenal mucosa
8
endodermal cell
8
immortal human breast epithelial cell line cell
8
lower leg skin
8
omental fat pad
8
right renal pelvis
8
thoracic aorta
8
tongue
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
7
GM12875
7
H1-hESC
7
HL-60
7
IMR-90
7
LNCaP clone FGC
7
SK-N-MC
7
T-cell acute lymphoblastic leukemia
7
T47D
7
WI38
7
angular gyrus
7
cerebellum
7
embryonic stem cell
7
endometrium adenocarcinoma
7
esophageal adenocarcinoma
7
eye
7
fibroblast cell line
7
left cardiac atrium
7
left renal pelvis
7
limb
7
mesenchymal stem cell
7
stomach smooth muscle
7
tibial artery
7
trophoblast
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
Brodmann (1909) area 46
6
CMK
6
Caco-2 cell
6
Chondroid Chordoma
6
GM08714
6
GM12891
6
GM12892
6
GM19238
6
GM19239
6
GM19240
6
GM23248
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY1
6
OCI-LY7
6
PC-3
6
PC-9
6
RWPE1
6
SW480
6
WERI-Rb-1
6
ascending aorta
6
chorion membrane
6
esophagus
6
esophagus muscularis mucosa
6
hESC cell
6
mesodermal cell
6
mucosa of rectum
6
neuroblastoma cell line
6
vagina
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
HK-2 cell
5
HUES6
5
HUES64
5
HuH-7
5
KBM-7
5
LoVo cell
5
NB4
5
OCI-LY3
5
RPMI8226
5
SJSA1
5
muscle layer of colon
5
muscle layer of duodenum
5
osteosarcoma
5
prostate cancer cell line
5
umbilical cord
5
urinary bladder
4
A172
4
A673
4
ACC112
4
ACHN
4
Ammon's horn
4
C4-2B
4
Caki2
4
DND-41
4
DOHH2
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
GM23338
4
H4
4
H54
4
H7-hESC
4
HCT116
4
HS-27A
4
HS-5
4
HS-SY-2 cell
Disease term
3
clear cell renal carcinoma
Organ
4
kidney
Life stage
4
adult
Date released
3
September, 2022
1
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
foreskin fibroblast
biosample_type!
primary cell
Showing 4 of 4 results
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Download
FileSet
DSR461KQV
released
Annotation file set
: Candidate regulatory elements for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797XHP
released
Annotation file set
: Target gene predictions for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR032YTT
released
Annotation file set
: Chromatin states for BSS00160 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162JPE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caki2
Lab:
AMP-T2D consortium
Project:
AMP