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Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
1
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Target gene links
Annotation type Category
37
HiC
6
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
6
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
cell line
1
stem cell
Biosample term
88
monocyte
60
stomach
58
heart
49
brain
49
lung
49
muscle of arm
46
kidney
44
small intestine
43
placenta
42
A549
42
adrenal gland
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
muscle of leg
39
left lung
37
CD8-positive, alpha-beta T cell
33
right lung
33
thymus
31
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
neural progenitor cell
28
renal pelvis
27
left kidney
24
B cell
24
liver
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
22
spleen
20
breast cancer cell
19
MCF-7
17
K562
17
foreskin keratinocyte
16
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
15
foreskin fibroblast
15
trophoblast cell
14
mononuclear cell
14
sigmoid colon
12
CD14-positive monocyte
12
HepG2
12
adipose tissue
12
keratinocyte
12
layer of hippocampus
neuroblastoma cell
12
ovary
12
transverse colon
12
upper lobe of left lung
11
adipocyte
11
chorionic villus
11
fibroblast of lung
11
gastrocnemius medialis
11
muscle of trunk
11
psoas muscle
11
testis
11
thyroid gland
10
Peyer's patch
10
body of pancreas
10
bronchial epithelial cell
10
cardiac muscle cell
10
endocrine pancreas
10
endothelial cell of umbilical vein
10
gastric cancer cell
10
hepatocyte
10
mammary epithelial cell
10
natural killer cell
10
skeletal muscle tissue
9
HeLa-S3
9
Rhabdomyosarcoma
9
caudate nucleus
9
diffuse intrinsic pontine glioma
9
fibroblast of cardiac tissue
9
heart right ventricle
9
liposarcoma
9
neurosphere
9
prostate gland
9
regulatory T cell
9
retina
8
22Rv1
8
CD4-positive, alpha-beta T cell
8
H9
8
T cell
8
fibroblast of dermis
8
mammary gland epithelial cell
8
neuronal stem cell
8
osteoblast
8
pancreas
8
skeletal muscle myoblast
8
temporal lobe
8
tibial nerve
7
B-lymphoblastoid cell line
7
GM12878
7
HEK293
7
T-helper 1 cell
7
breast epithelium
7
colonic mucosa
7
esophageal adenocarcinoma
7
fibroblast cell line
7
left renal cortex interstitium
7
lower leg skin
7
right renal pelvis
7
substantia nigra
6
Chondroid Chordoma
6
GM06990
6
GM12864
6
GM12865
6
GM12875
6
H1-hESC
6
HL-60
6
IMR-90
6
NAMALWA cell
6
SK-N-DZ
6
SK-N-MC
6
SK-N-SH
6
aorta
6
cingulate gyrus
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus squamous epithelium
6
eye
6
hESC cell
6
immortal human breast epithelial cell line cell
6
mesenchymal stem cell
6
neuroblastoma cell line
6
omental fat pad
6
parathyroid adenoma
5
AG04449 cell
5
AG04450 cell
5
AG09309 cell
5
AG09319 cell
5
AG10803 cell
5
BE(2)-C
5
BJ cell
5
CD1c-positive myeloid dendritic cell
5
CMK
5
Caco-2 cell
5
Ewing sarcoma
5
GM08714
5
GM12891
5
GM12892
5
GM19238
5
GM19239
5
GM19240
5
GM23248
5
HAP-1
5
HT-29
5
LHCN-M2
5
LNCaP clone FGC
5
MG63
5
MM.1S
5
NT2-D1 cell
5
OCI-LY1
5
OCI-LY7
5
PC-3
5
RWPE1
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
dermis blood vessel endothelial cell
5
endodermal cell
5
esophagus muscularis mucosa
5
foreskin melanocyte
5
left cardiac atrium
5
left renal pelvis
5
mucosa of rectum
5
myoepithelial cell of mammary gland
5
neutrophil
5
osteosarcoma
5
prostate cancer cell line
5
right renal cortex interstitium
skin fibroblast
5
thoracic aorta
5
tongue
5
trophoblast
4
Brodmann (1909) area 46
4
Daoy
4
GM10248
4
GM10266
4
GM12873
4
HK-2 cell
4
HS-SY-2 cell
4
HUES6
4
HUES64
4
HuH-7
4
Jurkat
4
KARPAS-422 cell
4
KBM-7
4
LNCAP
4
LoVo cell
4
Mantle cell lymphoma
4
NB4
4
OCI-LY3
4
PC-9
4
RPMI8226
4
Rh-4 cell
4
SJSA1
4
T47D
4
WERI-Rb-1
Organ
6
embryo
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
August, 2017
1
October, 2022
Software used
2
chromhmm
2
macs
2
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_term_name!
neuroblastoma cell
skin fibroblast
Showing 6 of 6 results
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Download
FileSet
DSR876GWY
released
Annotation file set
: Binding sites annotation for H1-hESC (H1-hESC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR748AAQ
released
Annotation file set
: Target gene predictions for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR416QNM
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR188ZAX
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP