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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
binding sites
1
chromatin state
1
target gene predictions
Annotation Category
4
cis-regulatory elements
1
Target gene links
Annotation type Category
5
ChIP-seq
3
DNase-seq
2
HiC
Available data
4
bed bed3+
1
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
60
A549
24
MCF-7
23
K562
20
breast cancer cell
13
HepG2
12
HeLa-S3
12
neuroblastoma cell
11
gastric cancer cell
10
22Rv1
9
H9
9
Rhabdomyosarcoma
9
SK-N-DZ
9
SK-N-SH
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
liposarcoma
8
GM12878
8
HEK293
8
NAMALWA cell
8
diffuse intrinsic pontine glioma
7
B-lymphoblastoid cell line
7
GM06990
7
GM12864
7
GM12865
GM12875
7
HL-60
7
IMR-90
7
LNCaP clone FGC
7
SK-N-MC
7
T47D
7
WERI-Rb-1
7
WI38
7
fibroblast cell line
7
melanoma
7
squamous cell lung carcinoma
6
AG04449 cell
6
AG04450 cell
6
AG09309 cell
6
AG09319 cell
6
AG10803 cell
6
BE(2)-C
6
BJ cell
6
CMK
6
Caco-2 cell
6
GM08714
6
GM12891
6
GM12892
6
GM19238
6
GM19239
6
GM19240
6
GM23248
6
H1-hESC
6
HAP-1
6
HT-29
6
KARPAS-422 cell
6
LHCN-M2
6
MG63
6
MM.1S
6
NT2-D1 cell
6
OCI-LY1
6
OCI-LY7
6
PC-3
6
PC-9
6
RPMI8226
6
RWPE1
6
SW480
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
prostate cancer cell line
5
Chondroid Chordoma
5
Daoy
5
Ewing sarcoma
5
GM10248
5
GM10266
5
HK-2 cell
5
HUES6
5
HUES64
5
HuH-7
5
KBM-7
5
LoVo cell
5
NB4
5
OCI-LY3
5
SJSA1
5
SK-MEL-5
5
VCaP cell
5
acute myeloid leukemia
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
glioblastoma cell
5
lymphoblastoid cell line
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
A172
4
A673
4
ACC112
4
ACHN
4
C4-2B
4
Caki2
4
DND-41
4
DOHH2
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
4
GM04503
4
GM04504
4
GM12873
4
GM18507
4
GM23338
4
H4
4
H54
4
H7-hESC
4
HCT116
4
HS-27A
4
HS-5
4
HS-SY-2 cell
4
HT1080
4
HUES48
4
Jurkat
4
KMS-11
4
KOPT-K1
4
L1-S8
4
LNCAP
4
Loucy
4
M059J
4
Mantle cell lymphoma
4
NCI-H460 cell
4
NCI-H929
4
Panc1
4
RCC 7860
4
RPMI7951
4
RS4-11 cell
4
RWPE2
4
Rh-4 cell
4
SJCRH30
4
SU-DHL-6
4
Tumor-derived cell line
4
UCSF-4
4
cardiac muscle cell
4
dermal fibroblast
4
glioma cell
4
iPS DF 19.11
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
immortal neural cell line cell
4
keratinocyte
4
lymphocyte
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
4
renal cell carcinoma
3
8988T
3
AG08395 cell
3
AG08396 cell
3
AG20443
3
COLO-320 cell
3
COLO205
3
COLO829
3
CWRU1
3
DND-41 cell
3
ES-I3
3
GM03348
3
GM10847
3
GM12801
3
GM12872
3
GM12874
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293-T-REx cell
3
HEK293T
3
HPDE6-E6E7
3
HTR-8/Svneo
3
HuH-7.5
3
L1-S8R
3
MCF 10A
3
NCI-H226 cell
3
NHEK
3
Normal Human Astrocytes
3
PANC-1 cell
3
RKO
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SK-N-SH_RA
3
T-47D cell
3
U-266 cell
Disease term
3
colorectal adenocarcinoma
Organ
4
intestine
4
large intestine
Life stage
4
adult
Date released
3
September, 2022
2
February, 2021
Software used
2
r
1
chromhmm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
GM12875
Showing 5 of 5 results
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Download
FileSet
DSR756UQP
released
Annotation file set
: Candidate regulatory elements for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR292ELJ
released
Annotation file set
: Target gene predictions for BSS00492 HCT116 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR815ZTC
released
Annotation file set
: Chromatin states for BSS00492 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR730OKU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HCT116
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR448AMD
released
Annotation file set
: Binding sites annotation for Breast Hs_578T from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP