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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
cell line
Biosample term
24
A549
20
breast cancer cell
14
MCF-7
12
neuroblastoma cell
11
K562
11
gastric cancer cell
9
Rhabdomyosarcoma
9
liposarcoma
8
diffuse intrinsic pontine glioma
7
B-lymphoblastoid cell line
7
H9
7
fibroblast cell line
7
melanoma
7
squamous cell lung carcinoma
6
22Rv1
6
GM12878
6
HEK293
6
HeLa-S3
6
glioblastoma multiforme cancer stem cell
6
hESC cell
6
prostate cancer cell line
5
Chondroid Chordoma
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
GM12875
5
HL-60
5
IMR-90
5
SK-N-DZ
5
SK-N-MC
5
SK-N-SH
5
WERI-Rb-1
5
WI38
5
acute myeloid leukemia
5
esophageal adenocarcinoma
5
esophageal squamous cell carcinoma
5
glioblastoma cell
5
lymphoblastoid cell line
5
melanoma cell
5
osteosarcoma
5
synovial sarcoma cell
5
triple-negative breast cancer
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
4
BJ cell
4
CMK
4
Caco-2 cell
4
GM08714
4
GM12873
4
GM12891
4
GM12892
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
H1-hESC
4
HAP-1
4
HS-SY-2 cell
4
HT-29
4
Jurkat
4
KARPAS-422 cell
4
LHCN-M2
4
LNCAP
4
MG63
4
MM.1S
4
Mantle cell lymphoma
4
NAMALWA cell
4
NT2-D1 cell
4
OCI-LY1
4
OCI-LY7
4
PC-3
4
PC-9
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
Rh-4 cell
4
SW480
4
Tumor-derived cell line
4
cardiac muscle cell
4
dermal fibroblast
4
glioma cell
4
immortal neural cell line cell
4
keratinocyte
4
metastatic melanoma
4
neural progenitor cell
4
pancreatic cell line
3
COLO-320 cell
3
COLO205
3
DND-41 cell
3
Daoy
3
GM10248
3
GM10266
3
GM10847
3
GM12801
3
GM12872
3
GM12874
3
GM18505
3
GM18526
3
GM18951
3
GM19099
3
GM19193
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293-T-REx cell
3
HK-2 cell
3
HUES6
3
HUES64
3
KBM-7
3
LNCaP clone FGC
3
LoVo cell
3
MCF 10A
3
NB4
3
NHEK
3
Normal Human Astrocytes
3
OCI-LY3
3
PANC-1 cell
3
RKO
3
Raji cell
3
SAEC
3
SH-SY5Y cell
3
SJSA1
3
SK-MEL-5
3
SK-N-SH_RA
3
T-47D cell
3
T47D
3
U-266 cell
3
U-87 MG
3
U2OS
3
VCaP cell
3
WI-38 cell
3
diffuse large B-cell lymphoma
3
embryonic stem cell
3
endometrium adenocarcinoma
3
epithelial ovarian cancer cell
3
esophageal epithelial cell
3
fibroblast of cardiac tissue
3
hematopoietic cell
3
immortal human breast epithelial cell line cell
3
lung fibroblast cell line
3
lymphoblast
3
multiple myeloma cell line
3
prostate derived cell line
3
spinal cord
3
umbilical cord mesenchymal stem cell line cell
2
143B
2
501A
2
697 cell
2
769-P cell
2
786-O cell
2
A-1847 cell
2
A-375 cell
2
A-498 cell
2
A-673 cell
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
AGS cell
2
ALL-SIL cell
2
AsPC-1 cell
2
B-lymphocyte
2
BCBL-1 cell
2
BEAS-2B cell
2
BG03
2
BL-2 cell
2
BT-474 cell
2
BT-549 cell
2
Burkitt's lymphoma
2
BxPC-3 cell
2
C4-2B
2
C666-1 cell
2
CA46 cell
2
CAL-51 cell
2
CCRF-CEM cell
2
CFPAC-1 cell
2
CHL-1 cell
2
CHP-134 cell
2
COLO 741 cell
2
CTV-1 cell
2
CaSki cell
2
Caki-1 cell
2
Caki2
2
Calu-1 cell
2
Calu-3 cell
2
D283 Med cell
2
D341 Med cell
2
DK cell
2
DLD-1 cell
2
DND-41
2
DOHH-2 cell
2
DOHH2
2
DU 145 cell
2
Daudi
Disease term
1
renal cell adenocarcinoma
Organ
2
kidney
Life stage
2
adult
Date released
1
February, 2021
1
September, 2022
Software used
r
1
chromhmm
1
encode-ccres
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
organ_slims!
liver
software_used.software.name!
r
Showing 2 of 2 results
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Download
FileSet
DSR656AIC
released
Annotation file set
: Chromatin states for BSS01474 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722TFK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE RCC 7860
Lab:
AMP-T2D consortium
Project:
AMP