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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
2
accessible chromatin
2
target gene predictions
Annotation Category
6
cis-regulatory elements
2
Target gene links
Annotation type Category
11
ChIP-seq
8
DNase-seq
3
RNA-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
snATAC-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
6
tissue
1
cell line
1
primary cell
Biosample term
HeLa-S3
6
uterus
2
Ishikawa
Organ
281
kidney
240
brain
236
musculature of body
211
lung
207
epithelium
184
intestine
165
connective tissue
161
limb
130
heart
122
skin of body
114
large intestine
104
vasculature
101
extraembryonic component
99
embryo
88
bodily fluid
82
blood
79
stomach
77
blood vessel
58
small intestine
52
pancreas
51
ureter
49
liver
48
mammary gland
48
placenta
prostate gland
45
adrenal gland
44
bone element
42
penis
38
lymph node
37
eye
33
adipose tissue
33
thymus
30
gonad
27
spinal cord
26
esophagus
25
artery
23
spleen
16
lymphoid tissue
15
testis
14
ovary
14
thyroid gland
13
mouth
12
nerve
12
vein
10
pituitary gland
9
breast
8
uterus
7
bronchus
7
lymphatic vessel
7
skeleton
7
tongue
6
urinary bladder
6
vagina
3
bone marrow
3
nose
1
trachea
Life stage
5
adult
Date released
3
February, 2021
2
June, 2020
2
September, 2022
1
May, 2021
Software used
3
encode-ccres
2
macs
2
r
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
HeLa-S3
organ_slims!
prostate gland
Showing 8 of 8 results
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Download
FileSet
DSR903VBR
released
Annotation file set
: Candidate regulatory elements for BSS01884 uterus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR090SSF
released
Annotation file set
: Target gene predictions for BSS01884 uterus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR196WYN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE uterus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR703DFT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE uterus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR256RVP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Ishikawa
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR254PVY
released
Annotation file set
: enhancer-gene predicton of uterus-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR373YCF
released
Annotation file set
: Accessible chromatin annotation for Uterus Uterus from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR250RSS
released
Annotation file set
: Accessible chromatin annotation for Uterus Ishikawa from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP