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Citing CMDGA
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Annotation type
1
accessible chromatin
1
representative DNase hypersensitivity sites
Annotation Category
2
cis-regulatory elements
Annotation type Category
894
ChIP-seq
539
RNA-seq
305
single cell RNA-seq
147
scRNA-seq
84
snDropSeq
14
Expression arrays
12
snRNA-seq
7
ATAC-seq
4
RNA microarray
2
DNase-seq
2
snATAC-seq
1
DNA methylation profiling by array assay
1
quantitative proteomics
Available data
bed bed3+
67
bigWig
1
tsv
File set status
2
released
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
1
glomerular endothelial cell
1
myocyte
Organ
1
epithelium
1
kidney
Date released
1
February, 2021
1
June, 2020
Software used
deltasvm
1
altius-index
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
muscle of back
files.file_type!
bed bed3+
software_used.software.name!
deltasvm
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FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP