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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
ChIP-seq
4
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
41
A549
16
MCF-7
15
K562
10
pituitary stalk
9
H9
9
HeLa-S3
7
SK-N-DZ
7
SK-N-SH
6
22Rv1
6
WI38
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
4
A172
4
A673
4
ACHN
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
4
HL-60
4
HUES6
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
iPS DF 19.11
3
ACC112
3
AG04449 cell
3
AG04450 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
C4-2B
3
Caco-2 cell
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM03348
3
GM08714
3
GM12875
3
GM18507
3
GM19240
3
GM23338
3
H54
3
HCT116
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HUES64
3
HuH-7
3
Jurkat
3
KMS-11
3
KOPT-K1
3
L1-S8R
3
Loucy
3
MCF 10A
3
NB4
NCI-H226 cell
3
NCI-H929
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
3
RWPE2
3
SK-MEL-5
3
SU-DHL-6
3
U937
3
UCSF-4
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
2
8988T
2
AG08395 cell
2
AG10803
2
AG20443
2
BJAB cell
2
COLO829
2
CWRU1
2
ES-I3
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM19238
2
GM19239
2
GM20000
2
HCT-116 cell
2
HEK293T
2
HK-2 cell
2
HPDE6-E6E7
2
HTR-8/Svneo
2
HuH-7.5
2
MCF 10A cell
2
MDA-MB-231 cell
2
NAMALWA
2
NCCIT cell
2
NCI-H460 cell
2
RKO
2
Rh-4 cell
2
THP-1
2
VCaP cell
2
colon carcinoma
2
colon epithelial cell
2
fibroblast of cardiac tissue
2
foreskin fibroblast
2
glomerular visceral epithelial cell
2
iPS DF 4.7 Cell Line
2
iPS-NIHi11
2
iPS-NIHi7
2
lymphocyte
2
macrophage
2
medulloblastoma
2
renal cell carcinoma
2
urothelium cell line
1
786-O cell
1
A-673 cell
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
BE2C
1
BJ
1
COLO-829 cell
1
COLO205
1
Caco-2
1
D341 Med cell
1
D721Med
1
DG-75 cell
1
ECC-1
1
G-401 cell
1
GM12801
1
GM12873
1
GM12874
1
GP5d
1
H1
1
H7
1
HAC cell
1
HBMEC cell
1
HCEC 1CT
1
HFF-Myc
1
HGF
1
HK-2
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuTu-80 cell
1
Ishikawa
1
Jurkat, Clone E6-1
1
Karpas-422
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
Disease term
2
clear cell renal carcinoma
Organ
4
kidney
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
June, 2020
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
NCI-H226 cell
Showing 4 of 4 results
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Download
FileSet
DSR461KQV
released
Annotation file set
: Candidate regulatory elements for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR797XHP
released
Annotation file set
: Target gene predictions for BSS00160 Caki2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162JPE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Caki2
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035CQD
released
Annotation file set
: Accessible chromatin annotation for Kidney Caki-2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP