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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
2
Target gene links
1
Genetic variant effects
Annotation type Category
93
ChIP-seq
20
RNA-seq
16
ATAC-seq
8
DNase-seq
2
snATAC-seq
1
DNA methylation profiling by array assay
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Biosample term
64
stomach
62
heart
51
muscle of arm
49
lung
48
brain
47
kidney
46
small intestine
45
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
34
right lung
33
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
27
left kidney
25
B cell
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
liver
19
heart left ventricle
17
sigmoid colon
17
trophoblast cell
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
ovary
14
thyroid gland
14
transverse colon
13
mononuclear cell
13
muscle of trunk
13
pancreas
13
psoas muscle
12
chorionic villus
12
endothelial cell of umbilical vein
12
retina
12
tibial nerve
11
Peyer's patch
11
adipocyte
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
11
heart right ventricle
11
natural killer cell
11
testis
11
upper lobe of left lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
cardiac muscle cell
10
fibroblast of lung
10
left renal cortex interstitium
10
left renal pelvis
10
neurosphere
10
pituitary stalk
10
regulatory T cell
10
right renal pelvis
10
skeletal muscle myoblast
9
H9
9
HeLa-S3
9
T cell
9
breast epithelium
9
esophagus squamous epithelium
9
hepatocyte
9
layer of hippocampus
9
neural progenitor cell
9
right renal cortex interstitium
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
coronary artery
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
lower leg skin
8
mesenchymal stem cell
8
omental fat pad
8
right atrium auricular region
8
tibial artery
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
chorion membrane
7
eye
7
frontal cortex
7
kidney tubule cell
7
mammary gland epithelial cell
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
substantia nigra
7
temporal lobe
7
tongue
7
trophoblast
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
putamen
6
renal cortical epithelial cell
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
uterus
6
vagina
5
cardiac fibroblast
5
Ammon's horn
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
left cardiac atrium
5
mammary epithelial cell
5
medulla oblongata
5
mesendoderm
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
Organ
5
brain
Life stage
3
unknown
Date released
2
June, 2020
2
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
1
May, 2021
Software used
3
macs
2
r
1
abc
1
deltasvm
1
encode-ccres
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
pancreatic beta cell
Showing 8 of 8 results
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR505TCS
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR669PBL
released
Annotation file set
: Accessible chromatin annotation for Blood Monocytes-CD14+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR152JXW
released
Annotation file set
: Accessible chromatin annotation of brain hippocampus astrocyte from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP