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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
3
target gene predictions
1
accessible chromatin
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
3
Target gene links
1
Genetic variant effects
Annotation type Category
8
ChIP-seq
8
DNase-seq
6
RNA-seq
5
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
64
stomach
62
heart
51
muscle of arm
49
lung
48
brain
47
kidney
46
small intestine
45
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
34
right lung
33
thymus
32
right kidney
31
renal cortex interstitium
31
renal pelvis
30
hematopoietic multipotent progenitor cell
CD14-positive monocyte
27
left kidney
25
B cell
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
liver
19
heart left ventricle
17
sigmoid colon
17
trophoblast cell
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
ovary
14
thyroid gland
14
transverse colon
13
mononuclear cell
13
muscle of trunk
13
pancreas
13
psoas muscle
12
chorionic villus
12
endothelial cell of umbilical vein
12
retina
12
tibial nerve
11
Peyer's patch
11
adipocyte
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
11
heart right ventricle
11
natural killer cell
11
testis
11
upper lobe of left lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
cardiac muscle cell
10
fibroblast of lung
10
left renal cortex interstitium
10
left renal pelvis
10
neurosphere
10
pituitary stalk
10
regulatory T cell
10
right renal pelvis
10
skeletal muscle myoblast
9
H9
9
HeLa-S3
9
T cell
9
breast epithelium
9
esophagus squamous epithelium
9
hepatocyte
9
layer of hippocampus
9
neural progenitor cell
9
right renal cortex interstitium
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
coronary artery
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
lower leg skin
8
mesenchymal stem cell
8
omental fat pad
8
right atrium auricular region
8
tibial artery
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
chorion membrane
7
eye
7
frontal cortex
7
kidney tubule cell
7
mammary gland epithelial cell
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
substantia nigra
7
temporal lobe
7
tongue
7
trophoblast
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
putamen
6
renal cortical epithelial cell
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
uterus
6
vagina
5
cardiac fibroblast
5
Ammon's horn
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
left cardiac atrium
5
mammary epithelial cell
5
medulla oblongata
5
mesendoderm
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
Organ
8
artery
8
blood vessel
8
heart
8
vasculature
Life stage
6
adult
Date released
4
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
1
May, 2021
Software used
4
r
1
abc
1
deltasvm
1
encode-ccres
1
macs
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
CD14-positive monocyte
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR010DRV
released
Annotation file set
: Candidate regulatory elements for BSS00243 coronary artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401LNJ
released
Annotation file set
: Candidate regulatory elements for BSS00242 coronary artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR422SRD
released
Annotation file set
: Target gene predictions for BSS00243 coronary artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR035MSO
released
Annotation file set
: Target gene predictions for BSS00242 coronary artery from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR019RRW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE coronary artery
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR233ZIX
released
Annotation file set
: enhancer-gene predicton of coronary_artery-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR402HCQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR543XWY
released
Annotation file set
: Accessible chromatin annotation of coronary artery from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP