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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
10
ChIP-seq
8
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
scRNA-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
primary cell
1
cell line
Biosample term
41
A549
41
common myeloid progenitor, CD34-positive
27
CD14-positive monocyte
23
B cell
23
CD4-positive, alpha-beta memory T cell
16
MCF-7
15
CD8-positive, alpha-beta memory T cell
15
K562
15
foreskin keratinocyte
13
mononuclear cell
13
trophoblast cell
12
endothelial cell of umbilical vein
11
foreskin fibroblast
10
T-helper 1 cell
10
fibroblast of lung
10
natural killer cell
10
neurosphere
10
pituitary stalk
10
regulatory T cell
9
CD8-positive, alpha-beta T cell
9
H9
9
HeLa-S3
9
skeletal muscle myoblast
8
CD4-positive, alpha-beta T cell
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
fibroblast of cardiac tissue
8
fibroblast of dermis
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
kidney tubule cell
7
osteoblast
6
22Rv1
6
T-cell
6
WI38
6
choroid plexus epithelial cell
6
endometrium adenocarcinoma
6
fibroblast of breast
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
renal cortical epithelial cell
5
cardiac fibroblast
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
cardiac muscle cell
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
skin fibroblast
5
smooth muscle cell of the brain vasculature
4
A172
4
A673
4
ACHN
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
4
HL-60
4
HUES6
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
astrocyte
4
brain microvascular endothelial cell
4
brain pericyte
4
dermis lymphatic vessel endothelial cell
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the conjunctiva
4
fibroblast of villous mesenchyme
4
iPS DF 19.11
4
iris pigment epithelial cell
4
kidney capillary endothelial cell
4
lung microvascular endothelial cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
non-pigmented ciliary epithelial cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
3
ACC112
3
AG04449 cell
3
AG04450 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
C4-2B
3
Caco-2 cell
3
DND-41
3
DOHH2
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM03348
3
GM08714
3
GM12875
3
GM18507
3
GM19240
3
GM23338
3
H54
3
HCT116
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HUES64
3
HuH-7
3
Jurkat
3
KMS-11
3
KOPT-K1
3
L1-S8R
3
Loucy
3
MCF 10A
3
NB4
3
NCI-H226 cell
3
NCI-H929
3
NT2-D1 cell
3
OCI-LY1
3
OCI-LY3
3
RWPE2
3
SK-MEL-5
3
SU-DHL-6
3
U937
3
UCSF-4
3
astrocyte of the spinal cord
3
cardiac fibroblast
3
epithelial cell of esophagus
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
monocyte
3
skeletal muscle satellite cell
3
stromal cell of bone marrow
2
8988T
2
AG08395 cell
Organ
8
epithelium
8
prostate gland
Life stage
6
unknown
Date released
4
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
4
r
2
encode-ccres
1
abc
1
macs
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
Showing 8 of 8 results
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Download
FileSet
DSR374VHN
released
Annotation file set
: Candidate regulatory elements for BSS00309 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR286WGH
released
Annotation file set
: Candidate regulatory elements for BSS00308 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR120KRM
released
Annotation file set
: Target gene predictions for BSS00309 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR498KQI
released
Annotation file set
: Target gene predictions for BSS00308 epithelial cell of prostate from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113LMW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of prostate
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR965YPT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of prostate
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR327KAR
released
Annotation file set
: enhancer-gene predicton of epithelial_cell_of_prostate-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR008LFO
released
Annotation file set
: Accessible chromatin annotation for Prostate PrEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP