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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
14
snDropSeq
5
ChIP-seq
5
DNase-seq
1
RNA-seq
1
scRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
47
kidney
32
right kidney
31
renal cortex interstitium
31
renal pelvis
27
left kidney
10
left renal cortex interstitium
10
left renal pelvis
10
right renal pelvis
9
right renal cortex interstitium
7
kidney tubule cell
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
renal cortical epithelial cell
5
HEK293
5
epithelial cell of proximal tubule
5
kidney epithelial cell
5
kidney glomerular epithelial cell
4
ACHN
4
Caki2
4
RCC 7860
4
kidney capillary endothelial cell
3
G401
3
renal cell carcinoma
2
HEK293T
1
left kidney
1
RCC
1
cortex of kidney
1
glomerular epithelium
1
renal cortex tubule
Organ
5
epithelium
5
kidney
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
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Showing 5 of 5 results
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FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR412AJP
released
Annotation file set
: Target gene predictions for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711XKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of proximal tubule
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR347BGE
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP