Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
12
snDropSeq
4
DNase-seq
3
ChIP-seq
1
RNA-seq
1
scRNA-seq
Available data
4
bed bed3+
bigWig
File set status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
43
stomach
42
heart
38
A549
34
brain
33
muscle of arm
32
lung
32
small intestine
31
adrenal gland
30
kidney
30
placenta
28
large intestine
28
muscle of leg
27
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
24
thymus
23
CD14-positive monocyte
23
right lung
21
hematopoietic multipotent progenitor cell
21
right kidney
20
renal pelvis
19
B cell
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
left kidney
17
spinal cord
16
liver
14
CD8-positive, alpha-beta memory T cell
14
K562
14
spleen
13
adipose tissue
13
trophoblast cell
12
MCF-7
12
mononuclear cell
12
sigmoid colon
11
heart left ventricle
10
body of pancreas
10
gastrocnemius medialis
10
ovary
10
pituitary stalk
10
psoas muscle
10
thyroid gland
10
transverse colon
9
T cell
9
adipocyte
9
foreskin keratinocyte
9
muscle of trunk
8
caudate nucleus
8
chorionic villus
8
endocrine pancreas
8
fibroblast of cardiac tissue
8
natural killer cell
8
neural progenitor cell
8
pancreas
8
regulatory T cell
8
retina
8
tibial nerve
7
HeLa-S3
7
Peyer's patch
7
T-helper 1 cell
7
chorion membrane
7
endothelial cell of umbilical vein
7
fibroblast of dermis
7
fibroblast of lung
7
heart right ventricle
7
hepatocyte
7
mammary gland epithelial cell
7
skeletal muscle myoblast
7
testis
7
upper lobe of left lung
6
T-helper 17 cell
6
T-helper 2 cell
6
breast epithelium
6
coronary artery
6
dendritic cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
foreskin fibroblast
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
right atrium auricular region
6
skeletal muscle tissue
6
skin fibroblast
6
tibial artery
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
ascending aorta
5
bronchial epithelial cell
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
keratinocyte
5
kidney tubule cell
5
left renal cortex interstitium
5
left renal pelvis
5
limb
5
osteoblast
5
prostate gland
5
right renal cortex interstitium
5
right renal pelvis
5
tongue
5
trophoblast
5
urinary bladder
4
22Rv1
4
Brodmann (1909) area 46
4
GM12878
4
H1-hESC
4
H7-hESC
4
HAP-1
4
HT-29
4
HepG2
4
IMR-90
4
KARPAS-422 cell
4
LNCaP clone FGC
4
LoVo cell
4
MM.1S
4
OCI-LY7
4
PC-9
4
T47D
4
angular gyrus
4
aorta
4
bipolar neuron
4
cardiac muscle cell
4
cerebellum
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
fibroblast of breast
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
lower leg skin
4
medulla oblongata
4
mesendoderm
4
midbrain
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neutrophil
4
occipital lobe
4
omental fat pad
4
parathyroid adenoma
4
pons
4
putamen
4
renal cortical epithelial cell
4
stomach smooth muscle
4
substantia nigra
4
superior temporal gyrus
4
temporal lobe
4
thoracic aorta
4
uterus
4
vagina
3
A172
3
A673
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Ammon's horn
3
BE(2)-C
3
BJ cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CD8-positive, alpha-beta T cell
3
CMK
3
Caco-2 cell
3
Caki2
3
Daoy
3
GM03348
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM18507
3
GM19240
3
GM23248
3
H4
3
H9
3
HEK293
3
HL-60
Organ
4
epithelium
4
kidney
Life stage
2
unknown
Date released
2
September, 2022
1
June, 2020
1
May, 2020
Software used
2
r
1
deltasvm
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
files.file_type!
bigWig
software_used.software.name!
encode-ccres
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR225CIF
released
Annotation file set
: Candidate regulatory elements for BSS00387 glomerular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR373GGH
released
Annotation file set
: Target gene predictions for BSS00387 glomerular endothelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR275CPF
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney glomerular endothelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP