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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
64
stomach
62
heart
51
muscle of arm
49
lung
48
brain
47
kidney
46
small intestine
45
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
muscle of back
39
left lung
34
right lung
33
thymus
32
right kidney
31
common myeloid progenitor, CD34-positive
31
renal cortex interstitium
31
renal pelvis
27
hematopoietic multipotent progenitor cell
27
left kidney
24
CD14-positive monocyte
24
spinal cord
23
spleen
22
liver
20
B cell
19
heart left ventricle
17
sigmoid colon
17
trophoblast cell
16
MCF-7
16
foreskin keratinocyte
15
K562
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
ovary
14
thyroid gland
14
transverse colon
13
muscle of trunk
13
pancreas
13
psoas muscle
12
chorionic villus
12
endothelial cell of umbilical vein
12
retina
12
tibial nerve
11
Peyer's patch
11
caudate nucleus
11
foreskin fibroblast
11
heart right ventricle
11
natural killer cell
11
testis
11
upper lobe of left lung
10
CD8-positive, alpha-beta memory T cell
10
left renal cortex interstitium
10
left renal pelvis
10
mononuclear cell
10
neurosphere
10
pituitary stalk
10
right renal pelvis
9
CD8-positive, alpha-beta T cell
9
H9
9
HeLa-S3
9
breast epithelium
9
endocrine pancreas
9
esophagus squamous epithelium
9
layer of hippocampus
9
neural progenitor cell
9
right renal cortex interstitium
8
adipocyte
8
ascending aorta
8
cardiac muscle cell
8
coronary artery
8
dermis blood vessel endothelial cell
8
esophagus muscularis mucosa
8
lower leg skin
8
mesenchymal stem cell
8
omental fat pad
8
right atrium auricular region
8
tibial artery
7
SK-N-DZ
7
SK-N-SH
7
T cell
7
T-helper 1 cell
7
eye
7
frontal cortex
7
hepatocyte
7
kidney tubule cell
7
parathyroid adenoma
7
prostate gland
7
regulatory T cell
7
substantia nigra
7
temporal lobe
7
tongue
7
trophoblast
6
CD4-positive, alpha-beta memory T cell
6
angular gyrus
6
aorta
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
putamen
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
uterus
6
vagina
5
Ammon's horn
5
CD4-positive, alpha-beta T cell
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
T-helper 2 cell
5
T47D
5
bipolar neuron
5
chorion membrane
5
fibroblast of lung
5
hepatic stellate cell
5
kidney glomerular epithelial cell
5
left cardiac atrium
5
mammary gland epithelial cell
5
medulla oblongata
5
mesendoderm
5
mesodermal cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
4
cardiac fibroblast
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
4
HL-60
4
HUES6
4
KARPAS-422 cell
4
KBM-7
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
T-cell
4
WERI-Rb-1
4
cerebellar cortex
4
fibroblast of dermis
4
iPS DF 19.11
4
kidney capillary endothelial cell
4
mammary epithelial cell
4
muscle cell
4
naive T cell
4
neural cell
4
neuronal stem cell
Organ
2
epithelium
2
kidney
Life stage
unknown
Date released
1
January, 2020
1
May, 2020
Software used
1
deltasvm
1
macs
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
CMK
relevant_life_stage!
unknown
Showing 2 of 2 results
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Download
FileSet
DSR687VBP
released
Annotation file set
: Genetic variants with deltaSVM predictions in kidney epithelial cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR902MAL
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP