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Schema
Citing CMDGA
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Annotation type
5
candidate regulatory elements
3
target gene predictions
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
9
ChIP-seq
8
DNase-seq
2
RNA-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
41
A549
41
common myeloid progenitor, CD34-positive
30
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
25
B cell
24
stomach
23
CD4-positive, alpha-beta memory T cell
21
adrenal gland
20
spleen
17
liver
17
sigmoid colon
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
thyroid gland
14
transverse colon
13
heart left ventricle
13
mononuclear cell
13
pancreas
13
psoas muscle
12
endothelial cell of umbilical vein
12
tibial nerve
11
Peyer's patch
11
adipocyte
11
caudate nucleus
11
endocrine pancreas
11
foreskin fibroblast
heart
11
natural killer cell
11
ovary
11
small intestine
11
upper lobe of left lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
fibroblast of lung
10
kidney
10
pituitary stalk
10
regulatory T cell
10
skeletal muscle myoblast
9
HeLa-S3
9
T cell
9
breast epithelium
9
esophagus squamous epithelium
9
layer of hippocampus
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
ascending aorta
8
coronary artery
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of dermis
8
heart right ventricle
8
lower leg skin
8
omental fat pad
8
right atrium auricular region
8
tibial artery
7
SK-N-DZ
7
SK-N-SH
7
bronchial epithelial cell
7
frontal cortex
7
kidney tubule cell
7
lung
7
mammary gland epithelial cell
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
substantia nigra
7
temporal lobe
7
testis
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cerebellum
6
choroid plexus epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
foreskin melanocyte
6
gastroesophageal sphincter
6
globus pallidus
6
glomerular endothelial cell
6
glomerular visceral epithelial cell
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
putamen
6
renal cortical epithelial cell
6
stomach smooth muscle
6
thoracic aorta
6
uterus
6
vagina
5
cardiac fibroblast
5
Ammon's horn
5
GM12878
5
HAP-1
5
HT-29
5
HepG2
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte of the cerebellum
5
astrocyte of the hippocampus
5
bipolar neuron
5
cardiac muscle cell
5
epithelial cell of proximal tubule
5
hepatic stellate cell
5
kidney epithelial cell
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
medulla oblongata
5
mesenchymal stem cell
5
midbrain
5
middle frontal gyrus
5
occipital lobe
5
pons
5
retinal pigment epithelial cell
5
skeletal muscle cell
5
smooth muscle cell of the brain vasculature
5
subcutaneous abdominal adipose tissue
5
superior temporal gyrus
5
thymus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H4
4
HL-60
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
SJCRH30
4
SJSA1
4
SK-N-MC
4
SW480
4
WERI-Rb-1
4
astrocyte
4
brain microvascular endothelial cell
4
brain pericyte
4
cerebellar cortex
4
dermis lymphatic vessel endothelial cell
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the conjunctiva
4
fibroblast of villous mesenchyme
4
iPS DF 19.11
4
iris pigment epithelial cell
4
lung microvascular endothelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
non-pigmented ciliary epithelial cell
4
peripheral blood mononuclear cell
4
pulmonary artery endothelial cell
4
urinary bladder
Organ
7
lung
1
musculature of body
Life stage
embryonic
4
adult
2
child
1
young adult
Date released
4
September, 2022
3
February, 2021
1
May, 2021
Software used
4
r
3
encode-ccres
1
abc
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
heart
relevant_life_stage!
embryonic
Showing 8 of 8 results
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Download
FileSet
DSR934KAC
released
Annotation file set
: Candidate regulatory elements for BSS01201 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR655KYY
released
Annotation file set
: Candidate regulatory elements for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR417JTW
released
Annotation file set
: Target gene predictions for BSS01201 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR696RKA
released
Annotation file set
: Target gene predictions for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR300HLO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE lung
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR235EOO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE lung
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR128VDF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE lung
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR764OIT
released
Annotation file set
: enhancer-gene predicton of muscle_of_trunk_fetal-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP