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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
11
ChIP-seq
8
DNase-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
14
adipose tissue
11
adipocyte
11
foreskin fibroblast
10
fibroblast of lung
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
mesenchymal stem cell
8
omental fat pad
7
osteoblast
6
skin fibroblast
5
cardiac fibroblast
5
hepatic stellate cell
5
subcutaneous abdominal adipose tissue
4
GM23248
4
brain pericyte
4
fibroblast of mammary gland
4
fibroblast of peridontal ligament
4
fibroblast of pulmonary artery
4
fibroblast of the conjunctiva
4
fibroblast of villous mesenchyme
3
HT1080
3
cardiac fibroblast
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
stromal cell of bone marrow
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
pericyte cell
2
subcutaneous adipose tissue
1
omental fat pad
1
adipose-derived mesenchymal stem cell
1
beige adipocyte
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
pulmonary interstitial fibroblast
1
white adipose tissue
Organ
42
extraembryonic component
42
placenta
8
connective tissue
Life stage
3
adult
3
embryonic
Date released
4
September, 2022
2
February, 2021
1
June, 2020
1
May, 2021
Software used
4
r
2
encode-ccres
1
abc
1
macs
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
T-cell
Showing 8 of 8 results
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP