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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
6
RNA-seq
5
ChIP-seq
5
DNase-seq
Available data
4
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
64
stomach
60
heart
50
muscle of arm
49
lung
47
brain
46
small intestine
45
adrenal gland
45
kidney
42
large intestine
42
muscle of leg
42
placenta
41
A549
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
34
right lung
33
thymus
32
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
25
B cell
24
spinal cord
23
CD4-positive, alpha-beta memory T cell
23
spleen
22
liver
17
heart left ventricle
17
sigmoid colon
17
trophoblast cell
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
14
adipose tissue
14
body of pancreas
14
gastrocnemius medialis
14
ovary
14
thyroid gland
14
transverse colon
13
mononuclear cell
13
muscle of trunk
13
psoas muscle
12
chorionic villus
12
endothelial cell of umbilical vein
11
Peyer's patch
11
adipocyte
11
endocrine pancreas
11
foreskin fibroblast
11
natural killer cell
11
pancreas
11
retina
testis
11
tibial nerve
11
upper lobe of left lung
10
CD8-positive, alpha-beta T cell
10
T-helper 1 cell
10
caudate nucleus
10
fibroblast of lung
10
heart right ventricle
10
left renal cortex interstitium
10
neurosphere
10
pituitary stalk
10
regulatory T cell
10
skeletal muscle myoblast
9
H9
9
HeLa-S3
9
T cell
9
breast epithelium
9
cardiac muscle cell
9
esophagus squamous epithelium
9
layer of hippocampus
9
left renal pelvis
9
neural progenitor cell
9
right renal cortex interstitium
9
right renal pelvis
9
skeletal muscle tissue
8
CD4-positive, alpha-beta T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
hepatocyte
8
lower leg skin
8
mesenchymal stem cell
7
SK-N-DZ
7
SK-N-SH
7
ascending aorta
7
bronchial epithelial cell
7
chorion membrane
7
coronary artery
7
eye
7
mammary gland epithelial cell
7
omental fat pad
7
osteoblast
7
parathyroid adenoma
7
prostate gland
7
right atrium auricular region
7
substantia nigra
7
temporal lobe
7
tibial artery
7
tongue
7
trophoblast
6
22Rv1
6
T-cell
6
WI38
6
angular gyrus
6
aorta
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
foreskin melanocyte
6
frontal cortex
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
kidney tubule cell
6
limb
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
skin fibroblast
6
stomach smooth muscle
6
thoracic aorta
6
urinary bladder
6
uterus
6
vagina
5
GM12878
5
HAP-1
5
HEK293
5
HT-29
5
HepG2
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
bipolar neuron
5
cerebellum
5
choroid plexus epithelial cell
5
globus pallidus
5
glomerular endothelial cell
5
glomerular visceral epithelial cell
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
medulla oblongata
5
mesendoderm
5
mesodermal cell
5
midbrain
5
putamen
5
renal cortical epithelial cell
5
subcutaneous abdominal adipose tissue
4
A172
4
A673
4
ACHN
4
Ammon's horn
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM23248
4
H1-hESC
4
H4
4
H7-hESC
4
HL-60
4
HUES6
4
KARPAS-422 cell
4
KBM-7
4
L1-S8
4
LHCN-M2
4
LNCAP
4
LoVo cell
4
M059J
4
MG63
4
PC-3
4
Panc1
4
RCC 7860
4
RPMI7951
Organ
5
brain
Life stage
4
adult
Date released
2
September, 2022
1
February, 2021
January, 2020
1
June, 2020
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
testis
month_released!
January, 2020
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR916RPZ
released
Annotation file set
: Candidate regulatory elements for BSS01469 putamen from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR506XLL
released
Annotation file set
: Target gene predictions for BSS01469 putamen from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR370LED
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE putamen
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR509CLD
released
Annotation file set
: Accessible chromatin annotation for Neural Putamen from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR061VHE
released
Annotation file set
: Variant allelic effects of putamen ENCODE DHSseq
Lab:
AMP-T2D consortium
Project:
AMP