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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
1
caQTL
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
11
ChIP-seq
8
DNase-seq
4
snATAC-seq
2
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
22
fibroblast
19
endothelial cell
18
macrophage
15
CD14-positive monocyte
12
excitatory neuron
12
smooth muscle cell
10
pancreatic alpha cell
10
pancreatic beta cell
10
pericyte cell
10
pituitary stalk
9
pancreatic delta cell
8
T cell
8
astrocyte
8
pancreatic acinar cell
7
adipocyte
7
pancreatic ductal cell
7
skeletal muscle fiber
6
dendritic cell
6
enterocyte
6
erythroblast
5
B cell
5
CD8-positive, alpha-beta T cell
5
inhibitory neuron
5
skeletal muscle satellite cell
5
type II pneumocyte
4
basal cell
4
cortical cell of adrenal gland
4
keratinocyte
4
mesenchymal stem cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic polypeptide-secreting cell
4
type I muscle cell
4
type II muscle cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
goblet cell
3
hepatocyte
3
megakaryocyte
3
memory B cell
3
mesothelial cell
3
monocyte
3
pancreatic stellate cell
3
type I pneumocyte
2
BJAB cell
2
CD4-positive helper T cell
2
Jurkat
2
MCF 10A cell
2
Muller cell
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
endocardial cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mast cell
2
mesangial cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
schwann cell
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
stellate neuron
2
stomach
2
thyroid follicular cell
2
trophoblast cell
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD4-positive, alpha-beta T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
GM12878
1
H1-hESC
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
HepG2
1
IMR-90
1
K562
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
alveolar macrophage
1
basal cell of epidermis
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac ventricle
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
common myeloid progenitor, CD34-positive
1
coronary artery
eccrine cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of prostate
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of dermis
1
fibroblast of lung
1
fibroblast of the aortic adventitia
1
foreskin fibroblast
1
foveolar cell of stomach
1
gastric goblet cell
1
gastrocnemius medialis
1
granular cell of epidermis
1
granulosa cell
1
hepatic stellate cell
1
hepatoblast
1
iPS DF 19.11
1
induced pluripotent stem cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
large intestine
1
liver
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary epithelial cell
1
mature NK T cell
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
mesendoderm
1
metanephros
1
microglial cell
1
muscle of leg
1
muscle of trunk
1
myoepithelial cell
1
myotube
1
naive t cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
neuronal stem cell
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic endocrine cell
Organ
4
connective tissue
Life stage
1
unknown
Date released
1
February, 2024
1
May, 2021
1
May, 2022
1
November, 2021
1
October, 2022
Software used
3
macs
1
abc
1
eigenmt
1
rasqual
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Jesse Engreitz, Stanford University
Project
4
AMP
1
ENCODE
RFA
2
AMP
2
AMP2
1
ENCODE3
biosample_term_name!
eccrine cell
Showing 5 of 5 results
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Download
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR074SNG
released
Annotation file set
: Accessible chromatin annotation of Natural Killer T Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP