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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
1
gene expression
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
58
ChIP-seq
27
DNase-seq
6
ATAC-seq
3
H3K27ac ChIP-Seq
3
snATAC-seq
2
RNA-seq
2
pCHi-C
1
scRNA-seq
Available data
3
bed bed3+
2
bigWig
1
tsv
1
txt
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
28
endothelial cell
25
fibroblast
22
macrophage
16
pancreatic beta cell
15
pancreatic alpha cell
15
pancreatic delta cell
14
smooth muscle cell
13
pancreatic acinar cell
12
excitatory neuron
12
pancreatic ductal cell
12
pericyte cell
8
T cell
8
natural killer cell
8
pancreatic stellate cell
7
B cell
7
astrocyte
7
skeletal muscle fiber
6
endothelial cell of lymphatic vessel
6
enterocyte
6
hepatocyte
6
mast cell
6
pancreatic polypeptide-secreting cell
5
adipocyte
5
erythroblast
5
inhibitory neuron
5
myofibroblast cell
5
pancreatic endothelial cell
5
skeletal muscle satellite cell
5
type II pneumocyte
4
CD8-positive, alpha-beta T cell
4
basal cell
4
cortical cell of adrenal gland
4
endocardial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
type I muscle cell
4
type II muscle cell
3
Schwann cell
3
cholangiocyte
3
colon epithelial cell
3
goblet cell
3
hepatic stellate cell
3
keratinocyte
3
kidney interstitial cell
3
leukocyte
3
megakaryocyte
3
memory B cell
3
mesangial cell
3
mesenchymal stem cell
3
mesothelial cell
3
nephron progenitor
3
pancreatic quiescent stellate cell
3
type I pneumocyte
2
Kupffer cell
2
Muller cell
2
S-shaped body
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiomyocytes (cardiac muscle cell)
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
dendritic cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
gamma-delta T cell
2
glial cell
2
glutamatergic neuron
2
kidney distal convoluted tubule epithelial cell
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasma cell
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
renal vesicle
2
schwann cell
2
smooth muscle cell of the esophagus
2
stellate neuron
2
thyroid follicular cell
2
ureteric bud
2
vascular associated smooth muscle cell
1
B-1 B cell
1
B-2 B cell
1
CD4-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
activated pancreatic stellate cell
1
alpha-beta T cell
1
alternatively activated macrophage
1
alveolar macrophage
1
aorta
1
aortic valve
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
cytotoxic T cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
epithelial cell of proximal tubule
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of the aortic adventitia
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular endothelial cell
1
glomerular visceral epithelial cell
1
granular cell of epidermis
1
granulosa cell
1
heart
1
heart right ventricle
1
hepatoblast
1
inflammatory macrophage
1
intestinal tuft cell
1
islet of Langerhans
1
kidney connecting tubule epithelial cell
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
left cardiac atrium
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature NK T cell
1
melanocyte
1
mesenchymal cell
1
meso-epithelial cell
1
metanephros
1
microglial cell
1
mitral valve
1
myoepithelial cell
1
naive t cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal epiphysis of femur
1
proximal tubule
1
proximal tubule cells with injury markers
1
pulmonary valve
1
quiescent pancreatic stellate cell
1
regular atrial cardiac myocyte
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal principal cell
1
respiratory goblet cell
1
retinal bipolar neuron
Life stage
1
adult
Date released
2
January, 2021
1
August, 2021
1
November, 2021
Software used
2
macs
1
cicero
1
r
1
seurat
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Project
2
T1D
1
AMP
1
ENCODE
RFA
2
T1D
1
AMP2
1
ENCODE3
biosample_term_name!
gastrocnemius medialis
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR512ARP
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for CD8-positive, alpha-beta T cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR813PSH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D