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Schema
Citing CMDGA
Clear Filters
Annotation type
3
variant allelic effects
1
accessible chromatin
1
caQTL
Annotation Category
4
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
34
ChIP-seq
25
DNase-seq
7
RNA-seq
5
snATAC-seq
2
scRNA-seq
1
ATAC-seq
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
8
fibroblast
7
endothelial cell
6
smooth muscle cell
5
macrophage
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle fiber
3
T cell
3
enterocyte
3
mesenchymal stem cell
3
myofibroblast cell
3
type I muscle cell
3
type II muscle cell
2
Schwann cell
2
adipocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
leukocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
skeletal muscle satellite cell
2
vascular associated smooth muscle cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
cortical cell of adrenal gland
1
fibroblast of the aortic adventitia
1
glial cell
1
granulosa cell
1
hepatocyte
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
neural cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
smooth muscle cell of the coronary artery
1
thyroid follicular cell
1
type II pneumocyte
0
CD4-positive, alpha-beta memory T cell
Life stage
1
adult
Date released
3
February, 2024
1
February, 2023
1
May, 2022
Software used
3
deltasvm
1
macs
1
rasqual
Lab
4
Bing Ren, UCSD
1
AMP-T2D consortium
Project
9
ENCODE
5
AMP
2
T1D
1
LungMap
RFA
4
AMP
1
AMP2
annotation_type_category!
H3K27ac ChIP-Seq
Showing 5 of 5 results
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Download
FileSet
DSR868SOF
released
Annotation file set
: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR974HML
released
Annotation file set
: Accessible chromatin annotation of Macrophages from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR536CVD
released
Annotation file set
: Variant allelic effects annotation of Macrophages from snATAC (sub-type3) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR334UBF
released
Annotation file set
: Variant allelic effects annotation of Macrophages from snATAC (sub-type2) from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR352DMH
released
Annotation file set
: Variant allelic effects annotation of Macrophages from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP