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Schema
Citing CMDGA
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Annotation type
1
accessible chromatin
1
variant allelic effects
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
14
ChIP-seq
11
DNase-seq
7
ATAC-seq
4
H3K27ac ChIP-Seq
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
8
fibroblast
7
endothelial cell
6
smooth muscle cell
5
macrophage
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle fiber
3
T cell
3
enterocyte
3
mesenchymal stem cell
3
myofibroblast cell
3
type I muscle cell
3
type II muscle cell
2
Schwann cell
2
adipocyte
2
basal cell
2
epithelial cell of esophagus
2
goblet cell
2
leukocyte
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
skeletal muscle satellite cell
2
vascular associated smooth muscle cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
cortical cell of adrenal gland
1
fibroblast of the aortic adventitia
1
glial cell
1
granulosa cell
1
hepatocyte
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mesothelial cell
1
neural cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic stellate cell
1
parietal cell
1
peptic cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
smooth muscle cell of the coronary artery
1
thyroid follicular cell
1
type II pneumocyte
Organ
2
connective tissue
Date released
2
February, 2024
Software used
1
deltasvm
1
macs
Lab
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
2
AMP
1
ENCODE
RFA
1
AMP
1
AMP2
biosample_term_name!
enteric neuron
naive T cell
Showing 2 of 2 results
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Download
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP