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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
10
ChIP-seq
8
DNase-seq
7
ATAC-seq
4
H3K27ac ChIP-Seq
4
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
11
endothelial cell
11
fibroblast
11
macrophage
7
pancreatic alpha cell
7
pancreatic beta cell
7
pancreatic delta cell
7
smooth muscle cell
6
natural killer cell
5
myofibroblast cell
4
B cell
4
T cell
4
adipocyte
4
endothelial cell of lymphatic vessel
4
mast cell
4
pancreatic acinar cell
4
pancreatic ductal cell
4
pancreatic polypeptide-secreting cell
4
skeletal muscle fiber
3
basal cell
3
enterocyte
3
pancreatic stellate cell
3
pericyte cell
2
CD8-positive, alpha-beta T cell
2
Schwann cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
capillary endothelial cell
2
conventional dendritic cell
2
endocardial cell
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
goblet cell
2
hepatocyte
2
megakaryocyte
2
memory B cell
2
mesenchymal stem cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
stellate neuron
2
type I muscle cell
2
type II muscle cell
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
Satellite Cells, Skeletal Muscle
1
bronchial goblet cell
1
cardiac muscle cell
1
cell
1
cholangiocyte
1
ciliated cell
1
club cell
1
cortical cell of adrenal gland
1
dendritic cell
1
endothelial cell of artery
1
fibroblast of the aortic adventitia
1
glial cell
1
granulosa cell
1
hepatic stellate cell
1
keratinocyte
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
leukocyte
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mesothelial cell
1
neural cell
1
neuroendocrine cell
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal cell
1
peptic cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
thyroid follicular cell
1
type I pneumocyte
Disease term
2
heart failure
Organ
4
connective tissue
Life stage
2
adult
Date released
2
February, 2024
2
May, 2024
Software used
1
deltasvm
1
macs
Lab
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP2
1
AMP
ENCODE3
award.rfa!
ENCODE3
biosample_term_name!
fibroblast of pulmonary artery
relevant_life_stage!
unknown
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP