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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
10
ChIP-seq
10
RNA-seq
7
ATAC-seq
7
DNase-seq
3
scRNA-seq
3
snATAC-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
25
fibroblast
22
endothelial cell
20
macrophage
14
smooth muscle cell
12
excitatory neuron
12
pericyte cell
10
pancreatic alpha cell
10
pancreatic beta cell
pancreatic delta cell
8
T cell
7
B cell
7
astrocyte
7
pancreatic acinar cell
7
skeletal muscle fiber
6
endothelial cell of lymphatic vessel
6
enterocyte
6
natural killer cell
6
pancreatic ductal cell
5
adipocyte
5
erythroblast
5
inhibitory neuron
5
mast cell
5
myofibroblast cell
5
skeletal muscle satellite cell
5
type II pneumocyte
4
basal cell
4
cortical cell of adrenal gland
4
endocardial cell
4
pancreatic polypeptide-secreting cell
4
type I muscle cell
4
type II muscle cell
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
goblet cell
3
hepatocyte
3
keratinocyte
3
megakaryocyte
3
memory B cell
3
mesenchymal stem cell
3
mesothelial cell
3
pancreatic stellate cell
3
type I pneumocyte
2
Muller cell
2
Schwann cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
hepatic stellate cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mesangial cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
stellate neuron
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
CD4-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
dendritic cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of the aortic adventitia
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulosa cell
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Disease term
1
liver disease
Organ
3
epithelium
3
liver
Life stage
1
adult
Date released
1
February, 2024
1
May, 2024
1
November, 2021
Software used
1
deltasvm
1
macs
Lab
2
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
1
ENCODE
RFA
1
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
Monocyte-derived Cell
pancreatic delta cell
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR529HOM
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of hepatocyte derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR084ACR
released
Annotation file set
: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP