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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
14
ChIP-seq
11
DNase-seq
7
ATAC-seq
5
snATAC-seq
4
H3K27ac ChIP-Seq
1
RNA-seq
1
snRNA-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
25
fibroblast
22
endothelial cell
20
macrophage
14
smooth muscle cell
12
excitatory neuron
12
pericyte cell
10
pancreatic alpha cell
10
pancreatic beta cell
9
pancreatic delta cell
8
T cell
7
B cell
7
astrocyte
7
pancreatic acinar cell
7
skeletal muscle fiber
6
endothelial cell of lymphatic vessel
6
enterocyte
6
natural killer cell
6
pancreatic ductal cell
5
adipocyte
5
erythroblast
5
inhibitory neuron
5
mast cell
5
myofibroblast cell
5
skeletal muscle satellite cell
5
type II pneumocyte
4
basal cell
4
cortical cell of adrenal gland
4
endocardial cell
4
pancreatic polypeptide-secreting cell
4
type I muscle cell
4
type II muscle cell
3
CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
goblet cell
3
hepatocyte
3
keratinocyte
3
megakaryocyte
3
memory B cell
3
mesenchymal stem cell
3
mesothelial cell
3
pancreatic stellate cell
3
type I pneumocyte
2
Muller cell
2
Schwann cell
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cholangiocyte
2
ciliated cell
2
club cell
2
conventional dendritic cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
erythrocyte
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gabaergic neuron
2
glial cell
2
glutamatergic neuron
2
hepatic stellate cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mesangial cell
2
monocyte
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
oligodendrocyte precursor cell
2
parietal cell
2
peptic cell
2
plasmacytoid dendritic cell
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
stellate neuron
2
thyroid follicular cell
2
vascular associated smooth muscle cell
1
CD4-positive, alpha-beta T cell
1
Satellite Cells, Skeletal Muscle
1
alveolar macrophage
1
basal cell of epidermis
1
bronchial goblet cell
1
cardiac endothelial cell
1
cardiac muscle cell
1
cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
dendritic cell
1
eccrine cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of the aortic adventitia
1
foveolar cell of stomach
1
gastric goblet cell
1
granular cell of epidermis
1
granulosa cell
1
hepatoblast
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature NK T cell
1
melanocyte
1
metanephros
1
microglial cell
1
myoepithelial cell
1
naive t cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non keratinizing barrier epithelial cell
1
oligodendrocyte
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
paneth cell
1
parietal epithelial cell
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
plasma cell
1
proximal epiphysis of femur
1
proximal tubule cells with injury markers
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
retinal bipolar neuron
1
retinal pigment epithelial cell
1
skeletal muscle fibroblast
1
skin fibroblast
1
small intestine goblet cell
1
smooth muscle cell of the coronary artery
1
stomach neuroendocrine cell
1
stromal cell
1
sympathetic neuron
1
trophoblast giant cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
Disease term
2
heart failure
Organ
5
connective tissue
Life stage
2
adult
Date released
2
February, 2024
2
May, 2024
1
November, 2021
Software used
2
macs
1
deltasvm
Lab
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
4
AMP
1
ENCODE
RFA
3
AMP2
1
AMP
1
ENCODE3
biosample_term_name!
left cardiac atrium
psoas muscle
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP