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Schema
Citing CMDGA
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Annotation type
2
accessible chromatin
1
caQTL
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
11
ChIP-seq
8
DNase-seq
3
snATAC-seq
3
snDropSeq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
HiC
1
RNA-seq
1
pCHi-C
1
snRNA-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
22
fibroblast
10
pericyte cell
3
adipocyte
3
mesenchymal stem cell
3
pancreatic stellate cell
2
extracellular matrix secreting cell
2
fibroblast of cardiac tissue
2
mesangial cell
1
fibroblast of the aortic adventitia
1
hepatic stellate cell
1
luteal cell
1
skin fibroblast
1
stromal cell
Organ
3
connective tissue
Life stage
1
unknown
Date released
1
February, 2024
1
May, 2022
1
October, 2022
Software used
2
macs
1
eigenmt
1
rasqual
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
RFA
2
AMP2
1
AMP
biosample_term_name!
SGBS preadipocytes
Showing 3 of 3 results
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FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP