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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
123
ChIP-seq
79
DNase-seq
25
RNA-seq
19
ATAC-seq
8
scRNA-seq
5
snATAC-seq
4
H3K27ac ChIP-Seq
3
RNA microarray
3
single cell RNA-seq
2
Expression arrays
2
pCHi-C
1
HiC
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
2
endothelial cell of hepatic sinusoid
2
hepatocyte
1
hepatic stellate cell
Organ
151
epithelium
52
connective tissue
51
pancreas
20
musculature of body
14
intestine
12
vasculature
10
lung
7
adrenal gland
7
blood vessel
7
heart
7
stomach
6
skin of body
5
liver
4
esophagus
4
eye
4
kidney
4
mammary gland
3
bone element
3
bone marrow
3
bronchus
3
extraembryonic component
3
large intestine
3
lymphatic vessel
2
embryo
2
placenta
2
small intestine
2
thyroid gland
1
artery
1
gonad
1
ovary
1
prostate gland
1
thymus
1
uterus
0
lymph node
Life stage
2
fetal
Date released
4
November, 2021
1
February, 2024
Software used
4
macs
1
deltasvm
Lab
5
Bing Ren, UCSD
Project
4
ENCODE
1
AMP
RFA
4
ENCODE3
1
AMP
relevant_life_stage!
embryonic
Showing 5 of 5 results
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Download
FileSet
DSR084ACR
released
Annotation file set
: Accessible chromatin annotation of Hepatocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR274TCU
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Stellate Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR947VGN
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Endothelial 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR698JKQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Hepatic Endothelial 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR179RJC
released
Annotation file set
: Variant allelic effects annotation of Hepatocytes from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP