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Citing CMDGA
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Annotation type
3
accessible chromatin
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
74
ChIP-seq
48
DNase-seq
5
ATAC-seq
4
snATAC-seq
2
H3K27ac ChIP-Seq
Available data
4
bed bed3+
3
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
Organ
161
epithelium
60
connective tissue
51
pancreas
20
musculature of body
15
vasculature
14
intestine
10
lung
9
heart
7
adrenal gland
7
blood vessel
7
liver
7
stomach
6
lymphatic vessel
6
skin of body
4
bone element
4
esophagus
4
eye
4
kidney
4
mammary gland
3
bone marrow
3
bronchus
3
extraembryonic component
3
large intestine
2
embryo
2
placenta
2
small intestine
2
thyroid gland
1
artery
1
gonad
1
limb
1
ovary
1
prostate gland
1
skeleton
1
thymus
1
uterus
Date released
3
November, 2021
1
February, 2024
Software used
3
macs
1
deltasvm
Lab
4
Bing Ren, UCSD
Project
3
ENCODE
1
AMP
RFA
3
ENCODE3
1
AMP
software_used.software.name!
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Showing 4 of 4 results
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Download
FileSet
DSR221MTY
released
Annotation file set
: Accessible chromatin annotation of Mammary Luminal Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR245LTB
released
Annotation file set
: Accessible chromatin annotation of Mammary Luminal Epithelial Cell 1 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR492XEZ
released
Annotation file set
: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR732VXG
released
Annotation file set
: Variant allelic effects annotation of Mammary epithelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP