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Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA binding
1
DNA methylation
Assay
4
ChIP-seq
DNase-seq
1
RRBS
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Target of assay
3
transcription factor
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Biosample type
5
tissue
Organ
5
liver
Life stage
4
adult
2
child
1
unknown
Available data
5
fastq
4
bam
4
bed narrowPeak
4
bigWig
3
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Platform
3
Illumina Genome Analyzer IIx
1
Illumina Genome Analyzer II
1
Illumina HiSeq 2500
Run type
5
single-ended
Read length (nt)
36
50
6
33
5
36
3
200
2
32
Mapped read length (nt)
1
36
Library made from
5
DNA
Date released
3
August, 2017
2
December, 2017
Lab
5
AMP-T2D consortium
Replication type
3
anisogenic
1
isogenic
1
unreplicated
Audit category:
1
inconsistent control read length
assay_slims!
3D chromatin structure
assay_title!
DNase-seq
Showing 5 of 5 results
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Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR629646
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR335337
released
RRBS
of liver
Homo sapiens
liver female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP