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Citing CMDGA
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Assay category
4
DNA binding
Assay
4
ChIP-seq
1
GRO-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
3
GRCh38
3
hg19
1
hg18
Organism
5
Homo sapiens
Target of assay
2
transcription factor
1
broad histone mark
1
control
1
histone
1
histone modification
Biosample type
5
in vitro differentiated cells
Organ
5
embryo
Life stage
5
unknown
Available data
5
fastq
4
bam
4
bigWig
3
bed narrowPeak
1
bed bed3+
Platform
5
Illumina HiSeq 2500
Run type
5
single-ended
Read length (nt)
15
36
5
50
4
100
1
101
Library made from
5
DNA
Date released
4
December, 2017
1
January, 2018
Lab
5
AMP-T2D consortium
Replication type
4
unreplicated
1
isogenic
Audit category:
2
inconsistent control read length
assay_slims!
DNA accessibility
lab.title!
Mark McCarthy, Oxford
Showing 5 of 5 results
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Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR303983
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
PDX1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR236798
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR642129
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR209943
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP