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Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA methylation
2
DNA binding
Assay
4
RRBS
2
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
4
hg19
Organism
6
Homo sapiens
Target of assay
1
broad histone mark
1
histone
1
histone modification
1
transcription factor
Biosample type
4
tissue
1
cell line
1
primary cell
Organ
2
liver
2
musculature of body
1
brain
Life stage
3
adult
1
child
1
embryonic
1
unknown
Available data
264
fastq
bam
215
bigWig
200
bed narrowPeak
148
bigBed narrowPeak
93
bed broadPeak
84
bigBed broadPeak
39
tagAlign
37
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
Platform
5
Illumina Genome Analyzer IIx
1
Illumina Genome Analyzer II
Run type
6
single-ended
Read length (nt)
61
50
41
101
38
51
27
8
20
16
15
49
10
76
8
100
7
24
6
36
2
150
1
69
1
125
Library made from
6
DNA
Date released
4
August, 2017
1
November, 2017
1
October, 2017
Lab
6
AMP-T2D consortium
Replication type
5
isogenic
1
unreplicated
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assay_title!
CRISPRi RNA-seq
files.file_type!
bam
Showing 6 of 6 results
table-tab-icon
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Download
Experiment
TSTSR641802
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
TBL1XR1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR793865
released
Audit not_compliant
1
ChIP-seq
of brain
Homo sapiens
brain male embryo (122 days)
Target:
H3K9me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR335337
released
RRBS
of liver
Homo sapiens
liver female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR745497
released
RRBS
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue male adult (71 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR621123
released
RRBS
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR288454
released
RRBS
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP