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Assay category
136
DNA binding
37
Transcription
6
DNA methylation
4
DNA accessibility
Assay
2
ATAC-seq
2
DNase-seq
Project
4
AMP
RFA
4
AMP
Experiment status
3
released
1
archived
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Organ
2
brain
1
liver
1
pancreas
Life stage
2
adult
2
embryonic
Available data
4
bam
4
fastq
3
bed broadPeak
3
bigWig
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Platform
49
Illumina NovaSeq 6000
38
HiSeq HighOutput V4
29
Illumina HiSeq 4000
22
Illumina HiSeq 2000
22
Illumina NextSeq 500
4
Illumina HiSeq 2500
2
Illumina Genome Analyzer I
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
3
paired-ended
1
single-ended
Read length (nt)
2
36
2
50
Library made from
4
DNA
Date released
2
November, 2018
1
March, 2019
1
October, 2017
Lab
3
AMP-T2D consortium
1
Mark McCarthy, Oxford
Replication type
2
anisogenic
2
unreplicated
Showing 4 of 4 results
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Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR479BAW
released
DNase-seq
of brain
Homo sapiens
brain embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR656713
released
ATAC-seq
of cerebellum (Hemisphere)
Homo sapiens
cerebellum male adult (20 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR955785
archived
ATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (52 years) and female adult (57 years) and male adult (53 years) and male adult (54 years) and male adult (59 years)
Lab:
Mark McCarthy, Oxford
Project:
AMP